Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2679 and GFF2680 are separated by 3 nucleotides GFF2680 and GFF2681 are separated by 14 nucleotides GFF2681 and GFF2682 are separated by 193 nucleotides
GFF2679 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 269,408 to 270,562
GFF2679
GFF2680 - cytosolic long-chain acyl-CoA thioester hydrolase family protein, at 270,566 to 271,039
GFF2680
GFF2681 - Sulfate permease family protein, at 271,054 to 272,724
GFF2681
GFF2682 - hypothetical protein, at 272,918 to 274,432
GFF2682
Position (kb) 271
272
273 Strain fitness (log2 ratio) -1
0
1 at 270.117 kb on - strand, within GFF2679 at 270.117 kb on - strand, within GFF2679 at 270.135 kb on - strand, within GFF2679 at 270.173 kb on + strand, within GFF2679 at 270.176 kb on + strand, within GFF2679 at 270.176 kb on + strand, within GFF2679 at 270.176 kb on + strand, within GFF2679 at 270.177 kb on - strand, within GFF2679 at 270.583 kb on - strand at 270.890 kb on + strand, within GFF2680 at 270.891 kb on - strand, within GFF2680 at 270.894 kb on + strand, within GFF2680 at 270.895 kb on - strand, within GFF2680 at 271.184 kb on + strand at 271.397 kb on + strand, within GFF2681 at 271.547 kb on + strand, within GFF2681 at 271.790 kb on + strand, within GFF2681 at 271.790 kb on + strand, within GFF2681 at 272.027 kb on + strand, within GFF2681 at 272.027 kb on + strand, within GFF2681 at 272.096 kb on + strand, within GFF2681 at 272.096 kb on + strand, within GFF2681 at 272.096 kb on + strand, within GFF2681 at 272.097 kb on - strand, within GFF2681 at 272.097 kb on - strand, within GFF2681 at 272.097 kb on - strand, within GFF2681 at 272.559 kb on - strand at 272.559 kb on - strand at 272.559 kb on - strand at 272.559 kb on - strand at 272.701 kb on + strand at 272.737 kb on - strand at 272.955 kb on - strand at 273.102 kb on + strand, within GFF2682 at 273.134 kb on + strand, within GFF2682 at 273.135 kb on - strand, within GFF2682 at 273.151 kb on + strand, within GFF2682 at 273.151 kb on + strand, within GFF2682 at 273.151 kb on + strand, within GFF2682 at 273.151 kb on + strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.152 kb on - strand, within GFF2682 at 273.164 kb on + strand, within GFF2682 at 273.229 kb on + strand, within GFF2682 at 273.230 kb on - strand, within GFF2682 at 273.311 kb on + strand, within GFF2682 at 273.311 kb on + strand, within GFF2682 at 273.312 kb on - strand, within GFF2682 at 273.386 kb on - strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on + strand, within GFF2682 at 273.387 kb on - strand, within GFF2682 at 273.388 kb on - strand, within GFF2682 at 273.388 kb on - strand, within GFF2682 at 273.457 kb on + strand, within GFF2682 at 273.520 kb on + strand, within GFF2682 at 273.520 kb on + strand, within GFF2682
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 270,117 - GFF2679 0.61 +0.6 270,117 - GFF2679 0.61 -0.5 270,135 - GFF2679 0.63 +0.1 270,173 + GFF2679 0.66 +0.1 270,176 + GFF2679 0.66 -1.0 270,176 + GFF2679 0.66 -0.4 270,176 + GFF2679 0.66 -0.7 270,177 - GFF2679 0.67 -0.1 270,583 - -1.4 270,890 + GFF2680 0.68 +0.1 270,891 - GFF2680 0.69 -0.3 270,894 + GFF2680 0.69 +1.2 270,895 - GFF2680 0.69 +0.2 271,184 + -0.7 271,397 + GFF2681 0.21 +0.3 271,547 + GFF2681 0.30 +0.0 271,790 + GFF2681 0.44 -1.1 271,790 + GFF2681 0.44 -0.1 272,027 + GFF2681 0.58 -0.9 272,027 + GFF2681 0.58 -0.4 272,096 + GFF2681 0.62 +0.1 272,096 + GFF2681 0.62 -0.2 272,096 + GFF2681 0.62 +0.1 272,097 - GFF2681 0.62 -0.7 272,097 - GFF2681 0.62 -1.0 272,097 - GFF2681 0.62 +0.1 272,559 - +0.8 272,559 - +0.2 272,559 - +0.1 272,559 - +1.1 272,701 + +1.1 272,737 - -0.4 272,955 - -0.4 273,102 + GFF2682 0.12 -0.5 273,134 + GFF2682 0.14 +0.0 273,135 - GFF2682 0.14 -0.3 273,151 + GFF2682 0.15 -0.4 273,151 + GFF2682 0.15 +0.2 273,151 + GFF2682 0.15 +0.3 273,151 + GFF2682 0.15 +0.2 273,152 - GFF2682 0.15 +0.4 273,152 - GFF2682 0.15 +0.1 273,152 - GFF2682 0.15 -0.1 273,152 - GFF2682 0.15 +0.4 273,152 - GFF2682 0.15 -1.4 273,152 - GFF2682 0.15 +0.0 273,164 + GFF2682 0.16 +0.1 273,229 + GFF2682 0.21 +1.0 273,230 - GFF2682 0.21 -0.2 273,311 + GFF2682 0.26 +0.4 273,311 + GFF2682 0.26 -1.4 273,312 - GFF2682 0.26 +0.2 273,386 - GFF2682 0.31 +0.8 273,387 + GFF2682 0.31 +1.4 273,387 + GFF2682 0.31 -0.4 273,387 + GFF2682 0.31 -0.1 273,387 + GFF2682 0.31 -0.6 273,387 + GFF2682 0.31 -0.5 273,387 - GFF2682 0.31 -0.2 273,388 - GFF2682 0.31 +0.4 273,388 - GFF2682 0.31 +0.2 273,457 + GFF2682 0.36 +0.2 273,520 + GFF2682 0.40 +0.9 273,520 + GFF2682 0.40 +1.6
Or see this region's nucleotide sequence