Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2658 and GFF2659 are separated by 279 nucleotides GFF2659 and GFF2660 are separated by 54 nucleotides GFF2660 and GFF2661 are separated by 46 nucleotides GFF2661 and GFF2662 are separated by 130 nucleotides
GFF2658 - Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B, at 250,113 to 253,061
GFF2658
GFF2659 - hypothetical protein, at 253,341 to 253,547
GFF2659
GFF2660 - Drug resistance transporter, Bcr/CflA family, at 253,602 to 254,771
GFF2660
GFF2661 - hypothetical protein, at 254,818 to 255,174
GFF2661
GFF2662 - Putative TEGT family carrier/transport protein, at 255,305 to 256,000
GFF2662
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1 at 252.610 kb on + strand, within GFF2658 at 252.760 kb on + strand, within GFF2658 at 252.760 kb on + strand, within GFF2658 at 252.760 kb on + strand, within GFF2658 at 252.761 kb on - strand, within GFF2658 at 252.761 kb on - strand, within GFF2658 at 252.761 kb on - strand, within GFF2658 at 252.761 kb on - strand, within GFF2658 at 252.761 kb on - strand, within GFF2658 at 252.761 kb on - strand, within GFF2658 at 252.761 kb on - strand, within GFF2658 at 252.761 kb on - strand, within GFF2658 at 252.763 kb on + strand, within GFF2658 at 252.773 kb on - strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 253.255 kb on - strand at 253.320 kb on + strand at 253.321 kb on - strand at 253.732 kb on - strand, within GFF2660 at 253.732 kb on - strand, within GFF2660 at 253.743 kb on + strand, within GFF2660 at 253.743 kb on + strand, within GFF2660 at 253.743 kb on + strand, within GFF2660 at 253.744 kb on - strand, within GFF2660 at 253.744 kb on - strand, within GFF2660 at 253.744 kb on - strand, within GFF2660 at 253.744 kb on - strand, within GFF2660 at 253.744 kb on - strand, within GFF2660 at 253.764 kb on + strand, within GFF2660 at 253.764 kb on + strand, within GFF2660 at 253.764 kb on + strand, within GFF2660 at 253.764 kb on + strand, within GFF2660 at 253.765 kb on - strand, within GFF2660 at 253.983 kb on + strand, within GFF2660 at 253.983 kb on + strand, within GFF2660 at 253.983 kb on + strand, within GFF2660 at 254.227 kb on - strand, within GFF2660 at 254.262 kb on + strand, within GFF2660 at 254.262 kb on + strand, within GFF2660 at 254.262 kb on + strand, within GFF2660 at 254.262 kb on + strand, within GFF2660 at 254.262 kb on + strand, within GFF2660 at 254.262 kb on + strand, within GFF2660 at 254.263 kb on - strand, within GFF2660 at 254.302 kb on - strand, within GFF2660 at 254.302 kb on - strand, within GFF2660 at 254.355 kb on + strand, within GFF2660 at 254.356 kb on - strand, within GFF2660 at 254.356 kb on - strand, within GFF2660 at 254.356 kb on - strand, within GFF2660 at 254.370 kb on + strand, within GFF2660 at 254.370 kb on + strand, within GFF2660 at 254.371 kb on - strand, within GFF2660 at 254.371 kb on - strand, within GFF2660 at 254.630 kb on + strand, within GFF2660 at 254.630 kb on + strand, within GFF2660 at 254.631 kb on - strand, within GFF2660 at 254.631 kb on - strand, within GFF2660 at 254.631 kb on - strand, within GFF2660 at 254.803 kb on + strand at 254.805 kb on + strand at 254.806 kb on - strand at 255.389 kb on + strand, within GFF2662 at 255.389 kb on + strand, within GFF2662 at 255.389 kb on + strand, within GFF2662 at 255.389 kb on + strand, within GFF2662 at 255.389 kb on + strand, within GFF2662 at 255.390 kb on - strand, within GFF2662
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 252,610 + GFF2658 0.85 -0.4 252,760 + GFF2658 0.90 +0.2 252,760 + GFF2658 0.90 -0.2 252,760 + GFF2658 0.90 +0.1 252,761 - GFF2658 0.90 +0.3 252,761 - GFF2658 0.90 -0.3 252,761 - GFF2658 0.90 -1.2 252,761 - GFF2658 0.90 +0.1 252,761 - GFF2658 0.90 -1.2 252,761 - GFF2658 0.90 -1.1 252,761 - GFF2658 0.90 -1.0 252,761 - GFF2658 0.90 -0.2 252,763 + GFF2658 0.90 +0.7 252,773 - -0.1 252,919 + -0.2 252,919 + +0.3 252,919 + -0.7 252,920 - -0.1 252,920 - +0.2 252,920 - -0.6 253,255 - +0.2 253,320 + +0.2 253,321 - +0.2 253,732 - GFF2660 0.11 -0.6 253,732 - GFF2660 0.11 +0.3 253,743 + GFF2660 0.12 -0.2 253,743 + GFF2660 0.12 -0.3 253,743 + GFF2660 0.12 -0.5 253,744 - GFF2660 0.12 +0.0 253,744 - GFF2660 0.12 -1.0 253,744 - GFF2660 0.12 +0.3 253,744 - GFF2660 0.12 -0.0 253,744 - GFF2660 0.12 -0.2 253,764 + GFF2660 0.14 -0.2 253,764 + GFF2660 0.14 -1.5 253,764 + GFF2660 0.14 -0.2 253,764 + GFF2660 0.14 -2.7 253,765 - GFF2660 0.14 +0.4 253,983 + GFF2660 0.33 -0.1 253,983 + GFF2660 0.33 -0.1 253,983 + GFF2660 0.33 -0.2 254,227 - GFF2660 0.53 -0.1 254,262 + GFF2660 0.56 +0.4 254,262 + GFF2660 0.56 -0.4 254,262 + GFF2660 0.56 -0.2 254,262 + GFF2660 0.56 +0.1 254,262 + GFF2660 0.56 +0.1 254,262 + GFF2660 0.56 +0.2 254,263 - GFF2660 0.56 -0.1 254,302 - GFF2660 0.60 -0.6 254,302 - GFF2660 0.60 -0.6 254,355 + GFF2660 0.64 -0.4 254,356 - GFF2660 0.64 -0.6 254,356 - GFF2660 0.64 +1.1 254,356 - GFF2660 0.64 +1.1 254,370 + GFF2660 0.66 -0.1 254,370 + GFF2660 0.66 +0.9 254,371 - GFF2660 0.66 +0.2 254,371 - GFF2660 0.66 -0.5 254,630 + GFF2660 0.88 -0.2 254,630 + GFF2660 0.88 +0.3 254,631 - GFF2660 0.88 -0.6 254,631 - GFF2660 0.88 -0.4 254,631 - GFF2660 0.88 +0.4 254,803 + +0.4 254,805 + -1.7 254,806 - +0.2 255,389 + GFF2662 0.12 -0.3 255,389 + GFF2662 0.12 +0.1 255,389 + GFF2662 0.12 -0.8 255,389 + GFF2662 0.12 +0.3 255,389 + GFF2662 0.12 +0.4 255,390 - GFF2662 0.12 -0.5
Or see this region's nucleotide sequence