Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2541

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
127,976	+		GFF2540	0.60	-1.8
127,977	-		GFF2540	0.60	-0.6
127,977	-		GFF2540	0.60	+1.4
128,177	+		GFF2540	0.68	+1.1
128,177	+		GFF2540	0.68	+0.7
128,178	-		GFF2540	0.68	+0.1
128,718	-				+0.7
128,789	+				-0.4
128,876	+				+0.6
128,909	+				+0.5
129,099	+		GFF2541	0.20	-0.9
129,166	-		GFF2541	0.29	+0.1
129,229	-		GFF2541	0.38	+0.3
129,319	-		GFF2541	0.50	+0.7
129,319	-		GFF2541	0.50	+0.1
129,319	-		GFF2541	0.50	-0.1
129,319	-		GFF2541	0.50	-2.0
129,331	-		GFF2541	0.51	-3.0
129,331	-		GFF2541	0.51	+0.2
130,547	-		GFF2542	0.67	+0.2
130,548	-		GFF2542	0.67	+0.7