Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1990

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1988 and GFF1989 are separated by 101 nucleotidesGFF1989 and GFF1990 are separated by 168 nucleotidesGFF1990 and GFF1991 are separated by 130 nucleotides GFF1988 - Transcriptional regulator, LysR family, at 864,540 to 865,457 GFF1988 GFF1989 - Rrf2-linked NADH-flavin reductase, at 865,559 to 866,203 GFF1989 GFF1990 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 866,372 to 868,450 GFF1990 GFF1991 - Possible gluconolactonase, at 868,581 to 869,621 GFF1991 Position (kb) 866 867 868 869Strain fitness (log2 ratio) -1 0 1at 865.471 kb on + strandat 865.498 kb on + strandat 865.766 kb on + strand, within GFF1989at 865.766 kb on + strand, within GFF1989at 865.766 kb on + strand, within GFF1989at 865.767 kb on - strand, within GFF1989at 866.063 kb on + strand, within GFF1989at 866.063 kb on + strand, within GFF1989at 866.064 kb on - strand, within GFF1989at 866.373 kb on + strandat 866.373 kb on + strandat 866.374 kb on - strandat 866.400 kb on + strandat 866.400 kb on + strandat 866.400 kb on + strandat 866.400 kb on + strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.401 kb on - strandat 866.486 kb on + strandat 866.487 kb on - strandat 866.487 kb on - strandat 866.487 kb on - strandat 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.652 kb on + strand, within GFF1990at 866.653 kb on - strand, within GFF1990at 866.653 kb on - strand, within GFF1990at 866.653 kb on - strand, within GFF1990at 866.670 kb on + strand, within GFF1990at 866.670 kb on + strand, within GFF1990at 866.670 kb on + strand, within GFF1990at 866.727 kb on + strand, within GFF1990at 866.728 kb on - strand, within GFF1990at 866.787 kb on + strand, within GFF1990at 866.788 kb on - strand, within GFF1990at 866.788 kb on - strand, within GFF1990at 866.788 kb on - strand, within GFF1990at 866.788 kb on - strand, within GFF1990at 866.901 kb on + strand, within GFF1990at 866.901 kb on + strand, within GFF1990at 866.901 kb on + strand, within GFF1990at 866.902 kb on - strand, within GFF1990at 866.902 kb on - strand, within GFF1990at 866.902 kb on - strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.913 kb on + strand, within GFF1990at 866.955 kb on + strand, within GFF1990at 866.956 kb on - strand, within GFF1990at 867.340 kb on - strand, within GFF1990at 867.421 kb on - strand, within GFF1990at 867.421 kb on - strand, within GFF1990at 867.421 kb on - strand, within GFF1990at 867.492 kb on + strand, within GFF1990at 867.493 kb on - strand, within GFF1990at 867.493 kb on - strand, within GFF1990at 867.493 kb on - strand, within GFF1990at 867.502 kb on - strand, within GFF1990at 867.528 kb on + strand, within GFF1990at 867.529 kb on - strand, within GFF1990at 867.529 kb on - strand, within GFF1990at 867.637 kb on - strand, within GFF1990at 867.637 kb on - strand, within GFF1990at 867.873 kb on + strand, within GFF1990at 867.874 kb on - strand, within GFF1990at 868.032 kb on + strand, within GFF1990at 868.215 kb on + strand, within GFF1990at 868.215 kb on + strand, within GFF1990at 868.215 kb on + strand, within GFF1990at 868.308 kb on + strandat 868.309 kb on - strandat 868.309 kb on - strandat 868.371 kb on + strandat 868.371 kb on + strandat 868.372 kb on - strandat 868.372 kb on - strandat 868.372 kb on - strandat 868.416 kb on + strandat 868.416 kb on + strandat 868.417 kb on - strandat 868.437 kb on + strandat 868.437 kb on + strandat 868.438 kb on - strandat 868.461 kb on + strandat 868.461 kb on + strandat 868.462 kb on - strandat 868.462 kb on - strandat 868.487 kb on + strandat 868.487 kb on + strandat 868.488 kb on - strandat 868.496 kb on + strandat 868.496 kb on + strandat 868.497 kb on - strandat 868.504 kb on + strandat 868.505 kb on - strandat 868.583 kb on - strandat 869.082 kb on + strand, within GFF1991at 869.083 kb on - strand, within GFF1991at 869.178 kb on + strand, within GFF1991at 869.178 kb on + strand, within GFF1991at 869.178 kb on + strand, within GFF1991at 869.178 kb on + strand, within GFF1991at 869.179 kb on - strand, within GFF1991at 869.179 kb on - strand, within GFF1991at 869.179 kb on - strand, within GFF1991

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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865,471 + -0.3
865,498 + -0.4
865,766 + GFF1989 0.32 +1.0
865,766 + GFF1989 0.32 -0.3
865,766 + GFF1989 0.32 +0.2
865,767 - GFF1989 0.32 +0.1
866,063 + GFF1989 0.78 -0.6
866,063 + GFF1989 0.78 -0.9
866,064 - GFF1989 0.78 -0.7
866,373 + -0.6
866,373 + +0.0
866,374 - +0.5
866,400 + -0.0
866,400 + -0.4
866,400 + -0.3
866,400 + +0.3
866,401 - +0.2
866,401 - -0.1
866,401 - -0.3
866,401 - -0.5
866,401 - +0.1
866,401 - +0.0
866,401 - -1.5
866,401 - -1.0
866,401 - -0.8
866,486 + +0.3
866,487 - -0.2
866,487 - -0.2
866,487 - -0.2
866,652 + GFF1990 0.13 +0.1
866,652 + GFF1990 0.13 +0.3
866,652 + GFF1990 0.13 +1.0
866,652 + GFF1990 0.13 +0.2
866,652 + GFF1990 0.13 +0.1
866,652 + GFF1990 0.13 -0.8
866,652 + GFF1990 0.13 +0.5
866,653 - GFF1990 0.14 +1.3
866,653 - GFF1990 0.14 +0.2
866,653 - GFF1990 0.14 +0.2
866,670 + GFF1990 0.14 +0.5
866,670 + GFF1990 0.14 +0.1
866,670 + GFF1990 0.14 -0.0
866,727 + GFF1990 0.17 -0.3
866,728 - GFF1990 0.17 +0.3
866,787 + GFF1990 0.20 +0.5
866,788 - GFF1990 0.20 +1.5
866,788 - GFF1990 0.20 +0.0
866,788 - GFF1990 0.20 +0.6
866,788 - GFF1990 0.20 -0.2
866,901 + GFF1990 0.25 -0.6
866,901 + GFF1990 0.25 -0.4
866,901 + GFF1990 0.25 -1.2
866,902 - GFF1990 0.25 -0.0
866,902 - GFF1990 0.25 +0.8
866,902 - GFF1990 0.25 -0.7
866,913 + GFF1990 0.26 +0.1
866,913 + GFF1990 0.26 -0.0
866,913 + GFF1990 0.26 +1.3
866,913 + GFF1990 0.26 +0.6
866,913 + GFF1990 0.26 -0.2
866,955 + GFF1990 0.28 +0.1
866,956 - GFF1990 0.28 +0.2
867,340 - GFF1990 0.47 -1.2
867,421 - GFF1990 0.50 -0.7
867,421 - GFF1990 0.50 -0.8
867,421 - GFF1990 0.50 +0.1
867,492 + GFF1990 0.54 +0.3
867,493 - GFF1990 0.54 -1.3
867,493 - GFF1990 0.54 -0.2
867,493 - GFF1990 0.54 +0.5
867,502 - GFF1990 0.54 +0.6
867,528 + GFF1990 0.56 -0.0
867,529 - GFF1990 0.56 +0.8
867,529 - GFF1990 0.56 +0.1
867,637 - GFF1990 0.61 +0.3
867,637 - GFF1990 0.61 +0.1
867,873 + GFF1990 0.72 +0.7
867,874 - GFF1990 0.72 -1.0
868,032 + GFF1990 0.80 +0.1
868,215 + GFF1990 0.89 -1.0
868,215 + GFF1990 0.89 -0.2
868,215 + GFF1990 0.89 +0.5
868,308 + -0.2
868,309 - -0.4
868,309 - -0.1
868,371 + -0.5
868,371 + -0.3
868,372 - -0.1
868,372 - +0.3
868,372 - -0.6
868,416 + +0.1
868,416 + -0.6
868,417 - +1.5
868,437 + +0.4
868,437 + -1.3
868,438 - +0.3
868,461 + -0.1
868,461 + +0.7
868,462 - +0.0
868,462 - -0.5
868,487 + +0.0
868,487 + -0.0
868,488 - +0.1
868,496 + +0.0
868,496 + +0.5
868,497 - +0.4
868,504 + +0.4
868,505 - -0.2
868,583 - -0.0
869,082 + GFF1991 0.48 -0.1
869,083 - GFF1991 0.48 -0.5
869,178 + GFF1991 0.57 +0.3
869,178 + GFF1991 0.57 -0.5
869,178 + GFF1991 0.57 -0.1
869,178 + GFF1991 0.57 +0.3
869,179 - GFF1991 0.57 -0.4
869,179 - GFF1991 0.57 -1.0
869,179 - GFF1991 0.57 -0.2

Or see this region's nucleotide sequence