Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1591 and GFF1592 are separated by 46 nucleotides GFF1592 and GFF1593 are separated by 378 nucleotides
GFF1591 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 446,219 to 447,259
GFF1591
GFF1592 - putative exported protein, at 447,306 to 448,211
GFF1592
GFF1593 - hypothetical protein, at 448,590 to 449,189
GFF1593
Position (kb) 447
448
449 Strain fitness (log2 ratio) -1
0
1 at 446.531 kb on + strand, within GFF1591 at 446.730 kb on - strand, within GFF1591 at 446.730 kb on - strand, within GFF1591 at 446.772 kb on + strand, within GFF1591 at 446.942 kb on + strand, within GFF1591 at 446.943 kb on - strand, within GFF1591 at 446.943 kb on - strand, within GFF1591 at 447.029 kb on + strand, within GFF1591 at 447.029 kb on + strand, within GFF1591 at 447.030 kb on - strand, within GFF1591 at 447.308 kb on - strand at 447.354 kb on + strand at 448.006 kb on + strand, within GFF1592 at 448.121 kb on + strand at 448.121 kb on + strand at 448.265 kb on - strand at 448.265 kb on - strand at 448.371 kb on - strand at 448.491 kb on - strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.556 kb on + strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.557 kb on - strand at 448.568 kb on + strand at 448.568 kb on + strand at 448.737 kb on + strand, within GFF1593 at 448.738 kb on - strand, within GFF1593 at 449.079 kb on + strand, within GFF1593 at 449.151 kb on + strand at 449.151 kb on + strand at 449.187 kb on + strand at 449.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 446,531 + GFF1591 0.30 +0.1 446,730 - GFF1591 0.49 -1.0 446,730 - GFF1591 0.49 -0.0 446,772 + GFF1591 0.53 -0.2 446,942 + GFF1591 0.69 +0.6 446,943 - GFF1591 0.70 +0.9 446,943 - GFF1591 0.70 +0.3 447,029 + GFF1591 0.78 -0.1 447,029 + GFF1591 0.78 -0.1 447,030 - GFF1591 0.78 -0.0 447,308 - -0.7 447,354 + +0.0 448,006 + GFF1592 0.77 +0.1 448,121 + -0.0 448,121 + +0.3 448,265 - +0.6 448,265 - -1.0 448,371 - +0.1 448,491 - -0.2 448,556 + -0.2 448,556 + -0.1 448,556 + -0.2 448,556 + -0.5 448,556 + -1.0 448,556 + +0.4 448,556 + +0.1 448,557 - -0.3 448,557 - -1.3 448,557 - -0.4 448,557 - +0.4 448,557 - +0.2 448,557 - -0.0 448,557 - -0.3 448,557 - -0.0 448,557 - -0.1 448,557 - -0.0 448,557 - -1.1 448,557 - -0.5 448,568 + -0.5 448,568 + -0.7 448,737 + GFF1593 0.24 +0.2 448,738 - GFF1593 0.25 -0.4 449,079 + GFF1593 0.81 -0.6 449,151 + -0.3 449,151 + -0.4 449,187 + +0.0 449,187 + -0.0
Or see this region's nucleotide sequence