Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1550

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1549 and GFF1550 are separated by 15 nucleotidesGFF1550 and GFF1551 are separated by 141 nucleotides GFF1549 - Transcriptional regulator, at 404,614 to 405,552 GFF1549 GFF1550 - hypothetical protein, at 405,568 to 406,287 GFF1550 GFF1551 - Acetolactate synthase large subunit (EC 2.2.1.6), at 406,429 to 407,991 GFF1551 Position (kb) 405 406 407Strain fitness (log2 ratio) -1 0 1 2at 404.653 kb on + strandat 404.653 kb on + strandat 404.654 kb on - strandat 405.873 kb on - strand, within GFF1550at 405.900 kb on - strand, within GFF1550at 406.452 kb on - strandat 406.452 kb on - strandat 406.452 kb on - strandat 406.600 kb on + strand, within GFF1551at 406.601 kb on - strand, within GFF1551at 406.601 kb on - strand, within GFF1551at 406.601 kb on - strand, within GFF1551at 407.137 kb on + strand, within GFF1551at 407.138 kb on - strand, within GFF1551at 407.138 kb on - strand, within GFF1551

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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404,653 + -0.5
404,653 + +1.9
404,654 - -0.6
405,873 - GFF1550 0.42 -0.8
405,900 - GFF1550 0.46 +0.0
406,452 - +0.3
406,452 - -0.9
406,452 - -1.5
406,600 + GFF1551 0.11 +1.8
406,601 - GFF1551 0.11 -0.8
406,601 - GFF1551 0.11 +0.0
406,601 - GFF1551 0.11 -0.0
407,137 + GFF1551 0.45 -0.7
407,138 - GFF1551 0.45 +0.0
407,138 - GFF1551 0.45 +1.0

Or see this region's nucleotide sequence