Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1473

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1471 and GFF1472 are separated by 9 nucleotidesGFF1472 and GFF1473 overlap by 23 nucleotidesGFF1473 and GFF1474 are separated by 240 nucleotidesGFF1474 and GFF1475 are separated by 106 nucleotides GFF1471 - hypothetical protein, at 322,131 to 322,499 GFF1471 GFF1472 - Regulatory protein, LuxR:Response regulator receiver, at 322,509 to 323,138 GFF1472 GFF1473 - Probable two-component sensor, near polyamine transporter, at 323,116 to 324,198 GFF1473 GFF1474 - COG0840: Methyl-accepting chemotaxis protein, at 324,439 to 324,867 GFF1474 GFF1475 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 324,974 to 325,291 GFF1475 Position (kb) 323 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 322.151 kb on - strandat 322.219 kb on + strand, within GFF1471at 322.219 kb on + strand, within GFF1471at 322.219 kb on + strand, within GFF1471at 322.219 kb on + strand, within GFF1471at 322.220 kb on - strand, within GFF1471at 322.220 kb on - strand, within GFF1471at 322.220 kb on - strand, within GFF1471at 322.254 kb on - strand, within GFF1471at 322.265 kb on - strand, within GFF1471at 322.285 kb on + strand, within GFF1471at 322.285 kb on + strand, within GFF1471at 322.285 kb on + strand, within GFF1471at 322.285 kb on + strand, within GFF1471at 322.285 kb on + strand, within GFF1471at 322.285 kb on + strand, within GFF1471at 322.285 kb on + strand, within GFF1471at 322.286 kb on - strand, within GFF1471at 322.286 kb on - strand, within GFF1471at 322.301 kb on - strand, within GFF1471at 322.315 kb on + strand, within GFF1471at 322.510 kb on + strandat 322.534 kb on + strandat 322.768 kb on + strand, within GFF1472at 322.768 kb on + strand, within GFF1472at 322.768 kb on + strand, within GFF1472at 322.768 kb on + strand, within GFF1472at 322.838 kb on - strand, within GFF1472at 322.873 kb on + strand, within GFF1472at 322.873 kb on + strand, within GFF1472at 322.874 kb on - strand, within GFF1472at 322.874 kb on - strand, within GFF1472at 322.874 kb on - strand, within GFF1472at 322.889 kb on - strand, within GFF1472at 323.033 kb on - strand, within GFF1472at 324.068 kb on + strand, within GFF1473at 324.069 kb on - strand, within GFF1473at 324.069 kb on - strand, within GFF1473at 324.089 kb on + strand, within GFF1473at 324.089 kb on + strand, within GFF1473at 324.089 kb on + strand, within GFF1473at 324.089 kb on + strand, within GFF1473at 324.090 kb on - strandat 324.090 kb on - strandat 324.090 kb on - strandat 324.348 kb on + strandat 324.348 kb on + strandat 324.349 kb on - strandat 324.358 kb on + strandat 324.359 kb on - strandat 324.360 kb on + strandat 324.360 kb on + strandat 324.360 kb on + strandat 324.360 kb on + strandat 324.362 kb on - strandat 324.386 kb on + strandat 324.386 kb on + strandat 324.389 kb on + strandat 324.389 kb on + strandat 324.389 kb on + strandat 324.431 kb on + strandat 324.432 kb on - strandat 324.904 kb on + strandat 324.905 kb on - strandat 324.905 kb on - strandat 324.924 kb on - strandat 325.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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322,151 - -0.4
322,219 + GFF1471 0.24 -0.2
322,219 + GFF1471 0.24 -0.1
322,219 + GFF1471 0.24 -0.0
322,219 + GFF1471 0.24 -0.1
322,220 - GFF1471 0.24 -0.8
322,220 - GFF1471 0.24 -0.4
322,220 - GFF1471 0.24 +0.0
322,254 - GFF1471 0.33 -0.8
322,265 - GFF1471 0.36 -0.5
322,285 + GFF1471 0.42 +0.2
322,285 + GFF1471 0.42 -0.3
322,285 + GFF1471 0.42 +0.0
322,285 + GFF1471 0.42 +0.1
322,285 + GFF1471 0.42 +0.1
322,285 + GFF1471 0.42 -0.1
322,285 + GFF1471 0.42 +0.4
322,286 - GFF1471 0.42 -0.2
322,286 - GFF1471 0.42 -2.0
322,301 - GFF1471 0.46 +1.3
322,315 + GFF1471 0.50 +0.2
322,510 + -0.1
322,534 + -0.5
322,768 + GFF1472 0.41 -0.2
322,768 + GFF1472 0.41 +1.4
322,768 + GFF1472 0.41 -0.0
322,768 + GFF1472 0.41 -0.1
322,838 - GFF1472 0.52 +0.3
322,873 + GFF1472 0.58 +0.6
322,873 + GFF1472 0.58 +0.0
322,874 - GFF1472 0.58 +0.8
322,874 - GFF1472 0.58 -0.4
322,874 - GFF1472 0.58 -0.8
322,889 - GFF1472 0.60 +0.4
323,033 - GFF1472 0.83 -0.3
324,068 + GFF1473 0.88 -0.5
324,069 - GFF1473 0.88 -0.4
324,069 - GFF1473 0.88 -0.6
324,089 + GFF1473 0.90 +0.4
324,089 + GFF1473 0.90 -1.6
324,089 + GFF1473 0.90 -0.4
324,089 + GFF1473 0.90 +0.2
324,090 - -1.4
324,090 - -1.6
324,090 - -0.2
324,348 + -0.4
324,348 + +0.4
324,349 - +0.1
324,358 + -0.2
324,359 - +2.2
324,360 + +0.1
324,360 + +0.6
324,360 + -0.1
324,360 + -0.3
324,362 - +0.1
324,386 + +0.1
324,386 + -0.5
324,389 + -0.6
324,389 + +0.2
324,389 + -0.2
324,431 + +0.6
324,432 - +0.1
324,904 + +0.3
324,905 - +0.3
324,905 - -0.1
324,924 - -1.1
325,005 - -0.4

Or see this region's nucleotide sequence