Experiment: Ying_all64 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF145 and GFF146 overlap by 1 nucleotides GFF146 and GFF147 are separated by 1 nucleotides GFF147 and GFF148 are separated by 250 nucleotides GFF148 and GFF149 are separated by 45 nucleotides
GFF145 - Methyl-accepting chemotaxis protein, at 160,821 to 163,067
GFF145
GFF146 - Flagellar motor protein, at 163,067 to 163,729
GFF146
GFF147 - FIG01210206: hypothetical protein, at 163,731 to 164,264
GFF147
GFF148 - hypothetical protein, at 164,515 to 164,652
GFF148
GFF149 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 164,698 to 165,960
GFF149
Position (kb) 163
164
165 Strain fitness (log2 ratio) -1
0
1 at 162.952 kb on - strand at 162.952 kb on - strand at 162.954 kb on + strand at 162.955 kb on - strand at 162.955 kb on - strand at 163.436 kb on + strand, within GFF146 at 163.436 kb on + strand, within GFF146 at 163.436 kb on + strand, within GFF146 at 163.764 kb on + strand at 163.764 kb on + strand at 163.765 kb on - strand at 164.154 kb on + strand, within GFF147 at 164.155 kb on - strand, within GFF147 at 165.169 kb on + strand, within GFF149 at 165.169 kb on + strand, within GFF149 at 165.206 kb on - strand, within GFF149
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1 remove 162,952 - -0.0 162,952 - -1.0 162,954 + +0.5 162,955 - +0.5 162,955 - +0.7 163,436 + GFF146 0.56 +1.4 163,436 + GFF146 0.56 -0.2 163,436 + GFF146 0.56 -0.9 163,764 + -0.5 163,764 + -0.5 163,765 - -0.6 164,154 + GFF147 0.79 -0.1 164,155 - GFF147 0.79 +1.0 165,169 + GFF149 0.37 -0.2 165,169 + GFF149 0.37 +1.3 165,206 - GFF149 0.40 -0.0
Or see this region's nucleotide sequence