Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF144

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF143 and GFF144 are separated by 97 nucleotidesGFF144 and GFF145 are separated by 4 nucleotides GFF143 - D-glycerate 2-kinase (EC 2.7.1.-), at 158,761 to 160,086 GFF143 GFF144 - hypothetical protein, at 160,184 to 160,816 GFF144 GFF145 - Methyl-accepting chemotaxis protein, at 160,821 to 163,067 GFF145 Position (kb) 160 161Strain fitness (log2 ratio) -1 0 1at 159.997 kb on + strandat 159.998 kb on - strandat 160.173 kb on - strandat 160.959 kb on + strandat 160.959 kb on + strandat 160.960 kb on - strandat 161.616 kb on + strand, within GFF145at 161.617 kb on - strand, within GFF145

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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159,997 + -0.1
159,998 - -0.1
160,173 - +0.8
160,959 + -0.9
160,959 + +0.0
160,960 - +0.1
161,616 + GFF145 0.35 -1.3
161,617 - GFF145 0.35 -0.8

Or see this region's nucleotide sequence