Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1369

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1368 and GFF1369 overlap by 4 nucleotidesGFF1369 and GFF1370 overlap by 1 nucleotides GFF1368 - Putative gluthatione transporter,solute-binding component, at 223,834 to 225,420 GFF1368 GFF1369 - Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A, at 225,417 to 226,700 GFF1369 GFF1370 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 226,700 to 227,680 GFF1370 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1at 224.507 kb on + strand, within GFF1368at 224.507 kb on + strand, within GFF1368at 224.564 kb on + strand, within GFF1368at 224.750 kb on + strand, within GFF1368at 224.750 kb on + strand, within GFF1368at 224.750 kb on + strand, within GFF1368at 224.751 kb on - strand, within GFF1368at 224.789 kb on + strand, within GFF1368at 224.789 kb on + strand, within GFF1368at 224.790 kb on - strand, within GFF1368at 224.790 kb on - strand, within GFF1368at 224.790 kb on - strand, within GFF1368at 224.790 kb on - strand, within GFF1368at 224.790 kb on - strand, within GFF1368at 225.056 kb on + strand, within GFF1368at 225.056 kb on + strand, within GFF1368at 225.057 kb on - strand, within GFF1368at 225.057 kb on - strand, within GFF1368at 225.057 kb on - strand, within GFF1368at 225.057 kb on - strand, within GFF1368at 225.057 kb on - strand, within GFF1368at 225.254 kb on + strand, within GFF1368at 225.254 kb on + strand, within GFF1368at 225.255 kb on - strand, within GFF1368at 225.559 kb on + strand, within GFF1369at 225.560 kb on - strand, within GFF1369at 225.623 kb on - strand, within GFF1369at 225.773 kb on - strand, within GFF1369at 225.784 kb on + strand, within GFF1369at 225.784 kb on + strand, within GFF1369at 225.785 kb on - strand, within GFF1369at 225.785 kb on - strand, within GFF1369at 225.785 kb on - strand, within GFF1369at 225.785 kb on - strand, within GFF1369at 226.315 kb on + strand, within GFF1369at 226.315 kb on + strand, within GFF1369at 226.316 kb on - strand, within GFF1369at 226.573 kb on + strandat 226.573 kb on + strandat 226.573 kb on + strandat 226.574 kb on - strandat 226.574 kb on - strandat 226.749 kb on + strandat 226.750 kb on - strandat 226.750 kb on - strandat 226.750 kb on - strandat 226.774 kb on + strandat 226.775 kb on - strandat 226.775 kb on - strandat 226.775 kb on - strandat 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.807 kb on - strand, within GFF1370at 226.807 kb on - strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.026 kb on - strand, within GFF1370at 227.026 kb on - strand, within GFF1370at 227.026 kb on - strand, within GFF1370at 227.238 kb on - strand, within GFF1370at 227.328 kb on + strand, within GFF1370at 227.328 kb on + strand, within GFF1370at 227.328 kb on - strand, within GFF1370at 227.329 kb on - strand, within GFF1370at 227.329 kb on - strand, within GFF1370at 227.411 kb on + strand, within GFF1370at 227.411 kb on + strand, within GFF1370at 227.595 kb on + strandat 227.595 kb on + strandat 227.595 kb on + strandat 227.596 kb on - strandat 227.596 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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224,507 + GFF1368 0.42 -0.1
224,507 + GFF1368 0.42 +0.7
224,564 + GFF1368 0.46 -2.0
224,750 + GFF1368 0.58 +0.9
224,750 + GFF1368 0.58 -0.2
224,750 + GFF1368 0.58 -0.0
224,751 - GFF1368 0.58 -0.2
224,789 + GFF1368 0.60 +0.1
224,789 + GFF1368 0.60 +0.7
224,790 - GFF1368 0.60 -0.8
224,790 - GFF1368 0.60 -0.2
224,790 - GFF1368 0.60 -0.0
224,790 - GFF1368 0.60 -0.4
224,790 - GFF1368 0.60 -0.9
225,056 + GFF1368 0.77 -0.9
225,056 + GFF1368 0.77 -0.1
225,057 - GFF1368 0.77 -0.0
225,057 - GFF1368 0.77 -0.0
225,057 - GFF1368 0.77 -1.1
225,057 - GFF1368 0.77 -0.0
225,057 - GFF1368 0.77 +0.7
225,254 + GFF1368 0.89 +0.7
225,254 + GFF1368 0.89 +0.4
225,255 - GFF1368 0.90 +0.0
225,559 + GFF1369 0.11 +1.6
225,560 - GFF1369 0.11 -0.9
225,623 - GFF1369 0.16 -0.5
225,773 - GFF1369 0.28 +0.2
225,784 + GFF1369 0.29 +0.2
225,784 + GFF1369 0.29 +0.7
225,785 - GFF1369 0.29 +0.1
225,785 - GFF1369 0.29 +0.1
225,785 - GFF1369 0.29 +0.0
225,785 - GFF1369 0.29 +0.5
226,315 + GFF1369 0.70 -1.0
226,315 + GFF1369 0.70 -0.6
226,316 - GFF1369 0.70 +0.3
226,573 + +0.6
226,573 + -0.3
226,573 + -1.5
226,574 - -0.4
226,574 - -1.5
226,749 + -0.9
226,750 - -1.3
226,750 - +0.4
226,750 - +0.0
226,774 + -0.4
226,775 - -0.1
226,775 - -0.2
226,775 - -0.3
226,806 + GFF1370 0.11 -0.2
226,806 + GFF1370 0.11 +0.3
226,806 + GFF1370 0.11 -0.8
226,806 + GFF1370 0.11 -1.7
226,806 + GFF1370 0.11 -0.2
226,807 - GFF1370 0.11 -1.0
226,807 - GFF1370 0.11 +0.4
227,025 + GFF1370 0.33 -0.4
227,025 + GFF1370 0.33 +0.4
227,025 + GFF1370 0.33 +0.4
227,025 + GFF1370 0.33 +0.1
227,026 - GFF1370 0.33 +0.1
227,026 - GFF1370 0.33 -1.6
227,026 - GFF1370 0.33 -0.6
227,238 - GFF1370 0.55 -0.9
227,328 + GFF1370 0.64 -0.4
227,328 + GFF1370 0.64 -0.6
227,328 - GFF1370 0.64 -0.4
227,329 - GFF1370 0.64 -0.2
227,329 - GFF1370 0.64 +0.8
227,411 + GFF1370 0.72 -2.1
227,411 + GFF1370 0.72 -0.4
227,595 + -0.6
227,595 + -0.1
227,595 + -0.3
227,596 - +0.2
227,596 - -1.4

Or see this region's nucleotide sequence