Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF121

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF120 and GFF121 are separated by 591 nucleotidesGFF121 and GFF122 are separated by 66 nucleotidesGFF122 and GFF123 are separated by 67 nucleotidesGFF123 and GFF124 are separated by 7 nucleotides GFF120 - Ribonuclease E (EC 3.1.26.12), at 131,668 to 134,763 GFF120 GFF121 - Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70), at 135,355 to 136,344 GFF121 GFF122 - HNS-like transcription regulator protein, at 136,411 to 136,716 GFF122 GFF123 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 136,784 to 137,260 GFF123 GFF124 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 137,268 to 138,245 GFF124 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1at 134.948 kb on - strandat 135.287 kb on - strandat 135.287 kb on - strandat 135.314 kb on + strandat 135.314 kb on + strandat 135.315 kb on - strandat 135.344 kb on + strandat 135.344 kb on + strandat 135.345 kb on - strandat 135.345 kb on - strandat 135.462 kb on + strand, within GFF121at 135.462 kb on + strand, within GFF121at 135.462 kb on + strand, within GFF121at 135.462 kb on + strand, within GFF121at 135.462 kb on + strand, within GFF121at 135.462 kb on + strand, within GFF121at 135.462 kb on + strand, within GFF121at 135.463 kb on - strand, within GFF121at 135.463 kb on - strand, within GFF121at 135.463 kb on - strand, within GFF121at 135.475 kb on + strand, within GFF121at 135.475 kb on + strand, within GFF121at 135.475 kb on + strand, within GFF121at 135.475 kb on + strand, within GFF121at 135.475 kb on + strand, within GFF121at 135.476 kb on - strand, within GFF121at 135.476 kb on - strand, within GFF121at 135.476 kb on - strand, within GFF121at 135.476 kb on - strand, within GFF121at 135.476 kb on - strand, within GFF121at 135.476 kb on - strand, within GFF121at 135.476 kb on - strand, within GFF121at 135.689 kb on + strand, within GFF121at 135.689 kb on + strand, within GFF121at 135.689 kb on + strand, within GFF121at 135.689 kb on + strand, within GFF121at 135.689 kb on + strand, within GFF121at 135.689 kb on + strand, within GFF121at 135.690 kb on - strand, within GFF121at 135.690 kb on - strand, within GFF121at 135.690 kb on - strand, within GFF121at 135.690 kb on - strand, within GFF121at 135.690 kb on - strand, within GFF121at 135.690 kb on - strand, within GFF121at 135.878 kb on - strand, within GFF121at 135.878 kb on - strand, within GFF121at 135.878 kb on - strand, within GFF121at 135.943 kb on + strand, within GFF121at 135.943 kb on + strand, within GFF121at 135.943 kb on + strand, within GFF121at 135.943 kb on + strand, within GFF121at 135.943 kb on + strand, within GFF121at 135.944 kb on - strand, within GFF121at 135.944 kb on - strand, within GFF121at 135.944 kb on - strand, within GFF121at 135.944 kb on - strand, within GFF121at 135.947 kb on + strand, within GFF121at 135.947 kb on + strand, within GFF121at 135.947 kb on + strand, within GFF121at 135.948 kb on - strand, within GFF121at 135.948 kb on - strand, within GFF121at 135.948 kb on - strand, within GFF121at 136.313 kb on + strandat 136.313 kb on + strandat 136.314 kb on - strandat 136.314 kb on - strandat 136.314 kb on - strandat 136.314 kb on - strandat 136.316 kb on - strandat 136.317 kb on + strandat 136.317 kb on + strandat 136.317 kb on + strandat 136.317 kb on + strandat 136.317 kb on + strandat 136.317 kb on + strandat 136.317 kb on + strandat 136.318 kb on - strandat 136.318 kb on - strandat 136.318 kb on - strandat 136.318 kb on - strandat 136.318 kb on - strandat 136.318 kb on - strandat 136.318 kb on - strandat 136.337 kb on + strandat 136.338 kb on - strandat 136.420 kb on + strandat 136.420 kb on + strandat 136.609 kb on + strand, within GFF122at 136.609 kb on + strand, within GFF122at 136.609 kb on + strand, within GFF122at 136.610 kb on - strand, within GFF122at 136.610 kb on - strand, within GFF122at 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.705 kb on + strandat 136.706 kb on - strandat 136.706 kb on - strandat 136.706 kb on - strandat 136.706 kb on - strandat 136.706 kb on - strandat 136.772 kb on - strandat 136.794 kb on + strandat 136.794 kb on + strandat 136.794 kb on + strandat 136.794 kb on + strandat 136.794 kb on + strandat 136.794 kb on + strandat 136.794 kb on + strandat 136.795 kb on - strandat 136.795 kb on - strandat 136.795 kb on - strandat 136.795 kb on - strandat 136.910 kb on + strand, within GFF123at 136.910 kb on + strand, within GFF123at 136.910 kb on + strand, within GFF123at 136.910 kb on + strand, within GFF123at 136.910 kb on + strand, within GFF123at 136.910 kb on + strand, within GFF123at 136.911 kb on - strand, within GFF123at 136.911 kb on - strand, within GFF123at 136.911 kb on - strand, within GFF123at 136.911 kb on - strand, within GFF123at 136.911 kb on - strand, within GFF123at 136.911 kb on - strand, within GFF123at 136.911 kb on - strand, within GFF123at 136.911 kb on - strand, within GFF123at 136.911 kb on - strand, within GFF123at 137.126 kb on + strand, within GFF123at 137.126 kb on + strand, within GFF123at 137.127 kb on - strand, within GFF123at 137.127 kb on - strand, within GFF123at 137.127 kb on - strand, within GFF123at 137.127 kb on - strand, within GFF123at 137.165 kb on + strand, within GFF123at 137.165 kb on + strand, within GFF123at 137.165 kb on + strand, within GFF123at 137.166 kb on - strand, within GFF123at 137.166 kb on - strand, within GFF123at 137.168 kb on + strand, within GFF123at 137.169 kb on - strand, within GFF123at 137.281 kb on + strandat 137.281 kb on + strandat 137.281 kb on + strandat 137.281 kb on + strandat 137.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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134,948 - -0.7
135,287 - -1.0
135,287 - -0.0
135,314 + +0.3
135,314 + +1.2
135,315 - -0.4
135,344 + +0.3
135,344 + +0.1
135,345 - +0.3
135,345 - +0.7
135,462 + GFF121 0.11 -0.2
135,462 + GFF121 0.11 -0.5
135,462 + GFF121 0.11 +0.1
135,462 + GFF121 0.11 +0.6
135,462 + GFF121 0.11 -0.5
135,462 + GFF121 0.11 -0.5
135,462 + GFF121 0.11 +0.2
135,463 - GFF121 0.11 -1.0
135,463 - GFF121 0.11 -0.2
135,463 - GFF121 0.11 +0.0
135,475 + GFF121 0.12 -1.4
135,475 + GFF121 0.12 -0.1
135,475 + GFF121 0.12 +1.4
135,475 + GFF121 0.12 -0.7
135,475 + GFF121 0.12 +0.0
135,476 - GFF121 0.12 +0.3
135,476 - GFF121 0.12 -0.6
135,476 - GFF121 0.12 -0.1
135,476 - GFF121 0.12 +0.2
135,476 - GFF121 0.12 +0.2
135,476 - GFF121 0.12 -0.3
135,476 - GFF121 0.12 +0.5
135,689 + GFF121 0.34 -0.1
135,689 + GFF121 0.34 -0.8
135,689 + GFF121 0.34 +0.6
135,689 + GFF121 0.34 -0.9
135,689 + GFF121 0.34 +0.6
135,689 + GFF121 0.34 -0.1
135,690 - GFF121 0.34 -0.0
135,690 - GFF121 0.34 -0.5
135,690 - GFF121 0.34 -1.2
135,690 - GFF121 0.34 +0.2
135,690 - GFF121 0.34 +0.6
135,690 - GFF121 0.34 +0.3
135,878 - GFF121 0.53 +0.4
135,878 - GFF121 0.53 -1.4
135,878 - GFF121 0.53 -0.4
135,943 + GFF121 0.59 +0.7
135,943 + GFF121 0.59 +0.4
135,943 + GFF121 0.59 -0.4
135,943 + GFF121 0.59 -0.2
135,943 + GFF121 0.59 -0.2
135,944 - GFF121 0.59 -2.8
135,944 - GFF121 0.59 +1.1
135,944 - GFF121 0.59 -0.2
135,944 - GFF121 0.59 +0.4
135,947 + GFF121 0.60 -1.5
135,947 + GFF121 0.60 -0.5
135,947 + GFF121 0.60 -0.7
135,948 - GFF121 0.60 -0.8
135,948 - GFF121 0.60 +0.5
135,948 - GFF121 0.60 -0.5
136,313 + +0.1
136,313 + +0.1
136,314 - +0.9
136,314 - -0.6
136,314 - +0.0
136,314 - -0.5
136,316 - +0.0
136,317 + -0.1
136,317 + +0.2
136,317 + -0.4
136,317 + +0.4
136,317 + -0.1
136,317 + -0.5
136,317 + -0.9
136,318 - +0.5
136,318 - -0.0
136,318 - -1.3
136,318 - +0.3
136,318 - -0.3
136,318 - -2.1
136,318 - -0.5
136,337 + +0.5
136,338 - -1.3
136,420 + +0.3
136,420 + +0.9
136,609 + GFF122 0.65 -1.1
136,609 + GFF122 0.65 -0.9
136,609 + GFF122 0.65 -0.4
136,610 - GFF122 0.65 -0.9
136,610 - GFF122 0.65 +0.7
136,705 + -0.0
136,705 + +0.2
136,705 + +0.4
136,705 + -0.2
136,705 + +1.1
136,705 + +0.2
136,705 + -0.0
136,705 + -0.1
136,705 + +0.1
136,705 + -0.4
136,705 + +0.1
136,705 + -1.9
136,706 - -0.8
136,706 - +0.0
136,706 - -0.3
136,706 - -0.5
136,706 - -0.3
136,772 - +0.1
136,794 + -0.1
136,794 + +0.4
136,794 + -0.3
136,794 + +1.6
136,794 + -0.3
136,794 + +0.1
136,794 + +0.2
136,795 - +0.2
136,795 - -0.1
136,795 - -0.3
136,795 - -0.9
136,910 + GFF123 0.26 +0.5
136,910 + GFF123 0.26 +0.0
136,910 + GFF123 0.26 -0.1
136,910 + GFF123 0.26 +0.1
136,910 + GFF123 0.26 +0.3
136,910 + GFF123 0.26 -0.0
136,911 - GFF123 0.27 -0.3
136,911 - GFF123 0.27 -0.4
136,911 - GFF123 0.27 -0.3
136,911 - GFF123 0.27 -0.4
136,911 - GFF123 0.27 +0.2
136,911 - GFF123 0.27 -0.2
136,911 - GFF123 0.27 +0.2
136,911 - GFF123 0.27 +0.1
136,911 - GFF123 0.27 -0.1
137,126 + GFF123 0.72 +0.2
137,126 + GFF123 0.72 +1.0
137,127 - GFF123 0.72 +0.3
137,127 - GFF123 0.72 -0.4
137,127 - GFF123 0.72 +0.8
137,127 - GFF123 0.72 +0.8
137,165 + GFF123 0.80 +0.2
137,165 + GFF123 0.80 -0.6
137,165 + GFF123 0.80 +0.9
137,166 - GFF123 0.80 -0.2
137,166 - GFF123 0.80 -0.5
137,168 + GFF123 0.81 +0.4
137,169 - GFF123 0.81 -1.8
137,281 + -2.2
137,281 + -0.4
137,281 + -0.0
137,281 + +0.3
137,282 - +0.3

Or see this region's nucleotide sequence