Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybeR and ybeQ are separated by 164 nucleotides ybeQ and ybeQ are separated by 234 nucleotides ybeQ and ybeL are separated by 69 nucleotides ybeL and leuS are separated by 235 nucleotides
MCAODC_26525: ybeR - Uncharacterized protein YbeR, at 2,022,015 to 2,022,722
ybeR
MCAODC_26530: ybeQ - Sel1-repeat-containing protein YbeQ, at 2,022,887 to 2,023,042
ybeQ
MCAODC_26535: ybeQ - Sel1-repeat-containing protein YbeQ, at 2,023,277 to 2,023,864
ybeQ
MCAODC_26540: ybeL - zinc ribbon-containing protein, at 2,023,934 to 2,024,416
ybeL
MCAODC_26545: leuS - leucine--tRNA ligase, at 2,024,652 to 2,027,234
leuS
Position (kb)
2023
2024 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2022.277 kb on - strand, within ybeR at 2022.284 kb on + strand, within ybeR at 2022.301 kb on - strand, within ybeR at 2022.327 kb on - strand, within ybeR at 2022.367 kb on + strand, within ybeR at 2022.381 kb on - strand, within ybeR at 2022.622 kb on - strand, within ybeR at 2022.804 kb on - strand at 2022.804 kb on - strand at 2022.924 kb on + strand, within ybeQ at 2022.974 kb on - strand, within ybeQ at 2023.038 kb on - strand at 2023.082 kb on + strand at 2023.082 kb on + strand at 2023.082 kb on + strand at 2023.124 kb on - strand at 2023.168 kb on - strand at 2023.177 kb on + strand at 2023.232 kb on + strand at 2023.233 kb on - strand at 2023.233 kb on - strand at 2023.233 kb on - strand at 2023.233 kb on - strand at 2023.342 kb on + strand, within ybeQ at 2023.343 kb on - strand, within ybeQ at 2023.343 kb on - strand, within ybeQ at 2023.361 kb on + strand, within ybeQ at 2023.377 kb on + strand, within ybeQ at 2023.378 kb on - strand, within ybeQ at 2023.387 kb on + strand, within ybeQ at 2023.388 kb on - strand, within ybeQ at 2023.469 kb on + strand, within ybeQ at 2023.526 kb on + strand, within ybeQ at 2023.528 kb on + strand, within ybeQ at 2023.528 kb on + strand, within ybeQ at 2023.529 kb on - strand, within ybeQ at 2023.529 kb on - strand, within ybeQ at 2023.556 kb on + strand, within ybeQ at 2023.556 kb on + strand, within ybeQ at 2023.557 kb on - strand, within ybeQ at 2023.557 kb on - strand, within ybeQ at 2023.559 kb on - strand, within ybeQ at 2023.559 kb on - strand, within ybeQ at 2023.559 kb on - strand, within ybeQ at 2023.571 kb on + strand, within ybeQ at 2023.571 kb on + strand, within ybeQ at 2023.571 kb on + strand, within ybeQ at 2023.571 kb on + strand, within ybeQ at 2023.572 kb on - strand, within ybeQ at 2023.572 kb on - strand, within ybeQ at 2023.613 kb on + strand, within ybeQ at 2023.614 kb on - strand, within ybeQ at 2023.614 kb on - strand, within ybeQ at 2023.614 kb on - strand, within ybeQ at 2023.628 kb on + strand, within ybeQ at 2023.628 kb on + strand, within ybeQ at 2023.628 kb on + strand, within ybeQ at 2023.630 kb on + strand, within ybeQ at 2023.630 kb on + strand, within ybeQ at 2023.630 kb on + strand, within ybeQ at 2023.630 kb on + strand, within ybeQ at 2023.630 kb on + strand, within ybeQ at 2023.630 kb on + strand, within ybeQ at 2023.630 kb on + strand, within ybeQ at 2023.630 kb on + strand, within ybeQ at 2023.631 kb on - strand, within ybeQ at 2023.631 kb on - strand, within ybeQ at 2023.631 kb on - strand, within ybeQ at 2023.631 kb on - strand, within ybeQ at 2023.631 kb on - strand, within ybeQ at 2023.631 kb on - strand, within ybeQ at 2023.631 kb on - strand, within ybeQ at 2023.634 kb on + strand, within ybeQ at 2023.634 kb on + strand, within ybeQ at 2023.634 kb on + strand, within ybeQ at 2023.634 kb on + strand, within ybeQ at 2023.634 kb on + strand, within ybeQ at 2023.634 kb on + strand, within ybeQ at 2023.634 kb on + strand, within ybeQ at 2023.634 kb on + strand, within ybeQ at 2023.635 kb on - strand, within ybeQ at 2023.636 kb on + strand, within ybeQ at 2023.636 kb on + strand, within ybeQ at 2023.636 kb on + strand, within ybeQ at 2023.637 kb on - strand, within ybeQ at 2023.637 kb on - strand, within ybeQ at 2023.688 kb on - strand, within ybeQ at 2023.724 kb on + strand, within ybeQ at 2023.724 kb on + strand, within ybeQ at 2023.726 kb on + strand, within ybeQ at 2023.727 kb on - strand, within ybeQ at 2023.738 kb on + strand, within ybeQ at 2023.738 kb on + strand, within ybeQ at 2023.738 kb on + strand, within ybeQ at 2023.738 kb on + strand, within ybeQ at 2023.739 kb on - strand, within ybeQ at 2023.742 kb on + strand, within ybeQ at 2023.742 kb on + strand, within ybeQ at 2023.742 kb on + strand, within ybeQ at 2023.742 kb on + strand, within ybeQ at 2023.743 kb on - strand, within ybeQ at 2023.743 kb on - strand, within ybeQ at 2023.793 kb on + strand, within ybeQ at 2023.857 kb on + strand at 2024.008 kb on - strand, within ybeL at 2024.076 kb on + strand, within ybeL at 2024.077 kb on - strand, within ybeL at 2024.220 kb on + strand, within ybeL at 2024.221 kb on - strand, within ybeL at 2024.221 kb on - strand, within ybeL at 2024.221 kb on - strand, within ybeL at 2024.221 kb on - strand, within ybeL at 2024.398 kb on - strand at 2024.398 kb on - strand at 2024.398 kb on - strand at 2024.445 kb on + strand at 2024.445 kb on + strand at 2024.446 kb on - strand at 2024.447 kb on + strand at 2024.448 kb on - strand at 2024.448 kb on - strand at 2024.450 kb on + strand at 2024.451 kb on - strand at 2024.451 kb on - strand at 2024.451 kb on - strand at 2024.453 kb on + strand at 2024.479 kb on + strand at 2024.479 kb on + strand at 2024.480 kb on - strand at 2024.504 kb on + strand at 2024.504 kb on + strand at 2024.504 kb on + strand at 2024.504 kb on + strand at 2024.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 2,022,277 - ybeR MCAODC_26525 0.37 -0.2 2,022,284 + ybeR MCAODC_26525 0.38 -0.9 2,022,301 - ybeR MCAODC_26525 0.40 -0.3 2,022,327 - ybeR MCAODC_26525 0.44 +1.7 2,022,367 + ybeR MCAODC_26525 0.50 +1.3 2,022,381 - ybeR MCAODC_26525 0.52 +1.0 2,022,622 - ybeR MCAODC_26525 0.86 +0.3 2,022,804 - +1.4 2,022,804 - +0.7 2,022,924 + ybeQ MCAODC_26530 0.24 +1.3 2,022,974 - ybeQ MCAODC_26530 0.56 -1.8 2,023,038 - -2.4 2,023,082 + +0.6 2,023,082 + +1.7 2,023,082 + +0.1 2,023,124 - +0.1 2,023,168 - +0.7 2,023,177 + -0.0 2,023,232 + +0.5 2,023,233 - +1.1 2,023,233 - -1.0 2,023,233 - -2.3 2,023,233 - +0.8 2,023,342 + ybeQ MCAODC_26535 0.11 +0.3 2,023,343 - ybeQ MCAODC_26535 0.11 -0.7 2,023,343 - ybeQ MCAODC_26535 0.11 +0.7 2,023,361 + ybeQ MCAODC_26535 0.14 +2.4 2,023,377 + ybeQ MCAODC_26535 0.17 +0.7 2,023,378 - ybeQ MCAODC_26535 0.17 -1.4 2,023,387 + ybeQ MCAODC_26535 0.19 -1.3 2,023,388 - ybeQ MCAODC_26535 0.19 -1.3 2,023,469 + ybeQ MCAODC_26535 0.33 +0.1 2,023,526 + ybeQ MCAODC_26535 0.42 +1.7 2,023,528 + ybeQ MCAODC_26535 0.43 -1.5 2,023,528 + ybeQ MCAODC_26535 0.43 +0.4 2,023,529 - ybeQ MCAODC_26535 0.43 -0.3 2,023,529 - ybeQ MCAODC_26535 0.43 +0.7 2,023,556 + ybeQ MCAODC_26535 0.47 -1.6 2,023,556 + ybeQ MCAODC_26535 0.47 +1.7 2,023,557 - ybeQ MCAODC_26535 0.48 -0.7 2,023,557 - ybeQ MCAODC_26535 0.48 -0.2 2,023,559 - ybeQ MCAODC_26535 0.48 -0.3 2,023,559 - ybeQ MCAODC_26535 0.48 +0.3 2,023,559 - ybeQ MCAODC_26535 0.48 +0.4 2,023,571 + ybeQ MCAODC_26535 0.50 +2.7 2,023,571 + ybeQ MCAODC_26535 0.50 +0.1 2,023,571 + ybeQ MCAODC_26535 0.50 +0.6 2,023,571 + ybeQ MCAODC_26535 0.50 -1.3 2,023,572 - ybeQ MCAODC_26535 0.50 -1.0 2,023,572 - ybeQ MCAODC_26535 0.50 +0.7 2,023,613 + ybeQ MCAODC_26535 0.57 +0.3 2,023,614 - ybeQ MCAODC_26535 0.57 +0.4 2,023,614 - ybeQ MCAODC_26535 0.57 -0.5 2,023,614 - ybeQ MCAODC_26535 0.57 +0.9 2,023,628 + ybeQ MCAODC_26535 0.60 +1.8 2,023,628 + ybeQ MCAODC_26535 0.60 +0.1 2,023,628 + ybeQ MCAODC_26535 0.60 +1.7 2,023,630 + ybeQ MCAODC_26535 0.60 -0.8 2,023,630 + ybeQ MCAODC_26535 0.60 +0.7 2,023,630 + ybeQ MCAODC_26535 0.60 +0.1 2,023,630 + ybeQ MCAODC_26535 0.60 -0.6 2,023,630 + ybeQ MCAODC_26535 0.60 -0.1 2,023,630 + ybeQ MCAODC_26535 0.60 -0.9 2,023,630 + ybeQ MCAODC_26535 0.60 +0.1 2,023,630 + ybeQ MCAODC_26535 0.60 +0.1 2,023,631 - ybeQ MCAODC_26535 0.60 +1.7 2,023,631 - ybeQ MCAODC_26535 0.60 -1.8 2,023,631 - ybeQ MCAODC_26535 0.60 -1.3 2,023,631 - ybeQ MCAODC_26535 0.60 +0.7 2,023,631 - ybeQ MCAODC_26535 0.60 -1.0 2,023,631 - ybeQ MCAODC_26535 0.60 -1.2 2,023,631 - ybeQ MCAODC_26535 0.60 -0.7 2,023,634 + ybeQ MCAODC_26535 0.61 -0.0 2,023,634 + ybeQ MCAODC_26535 0.61 -0.3 2,023,634 + ybeQ MCAODC_26535 0.61 +0.1 2,023,634 + ybeQ MCAODC_26535 0.61 +0.5 2,023,634 + ybeQ MCAODC_26535 0.61 +1.7 2,023,634 + ybeQ MCAODC_26535 0.61 -0.8 2,023,634 + ybeQ MCAODC_26535 0.61 -0.8 2,023,634 + ybeQ MCAODC_26535 0.61 -0.1 2,023,635 - ybeQ MCAODC_26535 0.61 +2.1 2,023,636 + ybeQ MCAODC_26535 0.61 -1.7 2,023,636 + ybeQ MCAODC_26535 0.61 +0.7 2,023,636 + ybeQ MCAODC_26535 0.61 -0.9 2,023,637 - ybeQ MCAODC_26535 0.61 -0.1 2,023,637 - ybeQ MCAODC_26535 0.61 +0.1 2,023,688 - ybeQ MCAODC_26535 0.70 -0.9 2,023,724 + ybeQ MCAODC_26535 0.76 +0.1 2,023,724 + ybeQ MCAODC_26535 0.76 -0.9 2,023,726 + ybeQ MCAODC_26535 0.76 +0.1 2,023,727 - ybeQ MCAODC_26535 0.77 -1.0 2,023,738 + ybeQ MCAODC_26535 0.78 -2.7 2,023,738 + ybeQ MCAODC_26535 0.78 -3.6 2,023,738 + ybeQ MCAODC_26535 0.78 +0.7 2,023,738 + ybeQ MCAODC_26535 0.78 -0.0 2,023,739 - ybeQ MCAODC_26535 0.79 +0.1 2,023,742 + ybeQ MCAODC_26535 0.79 -0.1 2,023,742 + ybeQ MCAODC_26535 0.79 -0.6 2,023,742 + ybeQ MCAODC_26535 0.79 -1.3 2,023,742 + ybeQ MCAODC_26535 0.79 +0.1 2,023,743 - ybeQ MCAODC_26535 0.79 -2.0 2,023,743 - ybeQ MCAODC_26535 0.79 -1.2 2,023,793 + ybeQ MCAODC_26535 0.88 -0.3 2,023,857 + +0.1 2,024,008 - ybeL MCAODC_26540 0.15 -0.2 2,024,076 + ybeL MCAODC_26540 0.29 -0.2 2,024,077 - ybeL MCAODC_26540 0.30 -1.1 2,024,220 + ybeL MCAODC_26540 0.59 -1.8 2,024,221 - ybeL MCAODC_26540 0.59 -0.7 2,024,221 - ybeL MCAODC_26540 0.59 +1.0 2,024,221 - ybeL MCAODC_26540 0.59 +2.4 2,024,221 - ybeL MCAODC_26540 0.59 -0.4 2,024,398 - +0.2 2,024,398 - +0.6 2,024,398 - +0.1 2,024,445 + -1.7 2,024,445 + -1.1 2,024,446 - -0.1 2,024,447 + -1.4 2,024,448 - +1.0 2,024,448 - -1.4 2,024,450 + -0.0 2,024,451 - -0.0 2,024,451 - +0.1 2,024,451 - -0.7 2,024,453 + -0.3 2,024,479 + -0.6 2,024,479 + +2.1 2,024,480 - -1.2 2,024,504 + -1.5 2,024,504 + -1.7 2,024,504 + +0.1 2,024,504 + +1.2 2,024,504 + -0.4
Or see this region's nucleotide sequence