Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycbJ and kdsB are separated by 153 nucleotides kdsB and ycaR overlap by 4 nucleotides ycaR and ycaQ are separated by 51 nucleotides
MCAODC_24820: ycbJ - Uncharacterized protein YcbJ, at 1,678,425 to 1,679,318
ycbJ
MCAODC_24825: kdsB - 3-deoxy-manno-octulosonate cytidylyltransferase, at 1,679,472 to 1,680,218
kdsB
MCAODC_24830: ycaR - protein YcaR, at 1,680,215 to 1,680,397
ycaR
MCAODC_24835: ycaQ - Uncharacterized protein YcaQ, at 1,680,449 to 1,681,681
ycaQ
Position (kb) 1680
1681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1679.218 kb on + strand, within ycbJ at 1679.286 kb on + strand at 1679.286 kb on + strand at 1679.366 kb on + strand at 1679.366 kb on + strand at 1679.367 kb on - strand at 1679.428 kb on + strand at 1679.428 kb on + strand at 1679.428 kb on + strand at 1679.429 kb on - strand at 1679.473 kb on + strand at 1680.431 kb on - strand at 1680.438 kb on - strand at 1680.464 kb on + strand at 1680.465 kb on - strand at 1680.465 kb on - strand at 1680.544 kb on + strand at 1680.598 kb on + strand, within ycaQ at 1680.598 kb on + strand, within ycaQ at 1680.598 kb on + strand, within ycaQ at 1680.601 kb on + strand, within ycaQ at 1680.601 kb on + strand, within ycaQ at 1680.602 kb on - strand, within ycaQ at 1680.625 kb on + strand, within ycaQ at 1680.677 kb on + strand, within ycaQ at 1680.677 kb on + strand, within ycaQ at 1680.677 kb on + strand, within ycaQ at 1680.692 kb on + strand, within ycaQ at 1680.712 kb on - strand, within ycaQ at 1680.739 kb on + strand, within ycaQ at 1680.741 kb on + strand, within ycaQ at 1680.741 kb on + strand, within ycaQ at 1680.741 kb on + strand, within ycaQ at 1680.741 kb on + strand, within ycaQ at 1680.742 kb on - strand, within ycaQ at 1680.742 kb on - strand, within ycaQ at 1680.742 kb on - strand, within ycaQ at 1680.742 kb on - strand, within ycaQ at 1680.994 kb on - strand, within ycaQ at 1681.121 kb on + strand, within ycaQ at 1681.122 kb on - strand, within ycaQ at 1681.177 kb on + strand, within ycaQ at 1681.181 kb on + strand, within ycaQ at 1681.181 kb on + strand, within ycaQ at 1681.182 kb on - strand, within ycaQ at 1681.238 kb on - strand, within ycaQ at 1681.245 kb on + strand, within ycaQ at 1681.276 kb on + strand, within ycaQ at 1681.286 kb on - strand, within ycaQ at 1681.286 kb on - strand, within ycaQ at 1681.286 kb on - strand, within ycaQ at 1681.286 kb on - strand, within ycaQ at 1681.296 kb on - strand, within ycaQ at 1681.296 kb on - strand, within ycaQ at 1681.296 kb on - strand, within ycaQ at 1681.342 kb on - strand, within ycaQ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,679,218 + ycbJ MCAODC_24820 0.89 -0.9 1,679,286 + +0.1 1,679,286 + +2.7 1,679,366 + +0.7 1,679,366 + +0.3 1,679,367 - -0.6 1,679,428 + +1.1 1,679,428 + -0.6 1,679,428 + +0.5 1,679,429 - +0.1 1,679,473 + +2.5 1,680,431 - -0.4 1,680,438 - +0.1 1,680,464 + -1.2 1,680,465 - -0.6 1,680,465 - +0.6 1,680,544 + +0.7 1,680,598 + ycaQ MCAODC_24835 0.12 +1.1 1,680,598 + ycaQ MCAODC_24835 0.12 +0.7 1,680,598 + ycaQ MCAODC_24835 0.12 +2.7 1,680,601 + ycaQ MCAODC_24835 0.12 +0.3 1,680,601 + ycaQ MCAODC_24835 0.12 -0.9 1,680,602 - ycaQ MCAODC_24835 0.12 -0.6 1,680,625 + ycaQ MCAODC_24835 0.14 +2.1 1,680,677 + ycaQ MCAODC_24835 0.18 +0.6 1,680,677 + ycaQ MCAODC_24835 0.18 +2.7 1,680,677 + ycaQ MCAODC_24835 0.18 -1.2 1,680,692 + ycaQ MCAODC_24835 0.20 +0.7 1,680,712 - ycaQ MCAODC_24835 0.21 -0.4 1,680,739 + ycaQ MCAODC_24835 0.24 -2.0 1,680,741 + ycaQ MCAODC_24835 0.24 +1.7 1,680,741 + ycaQ MCAODC_24835 0.24 -0.0 1,680,741 + ycaQ MCAODC_24835 0.24 +1.1 1,680,741 + ycaQ MCAODC_24835 0.24 -1.0 1,680,742 - ycaQ MCAODC_24835 0.24 -0.3 1,680,742 - ycaQ MCAODC_24835 0.24 +1.1 1,680,742 - ycaQ MCAODC_24835 0.24 -0.5 1,680,742 - ycaQ MCAODC_24835 0.24 +1.0 1,680,994 - ycaQ MCAODC_24835 0.44 -2.6 1,681,121 + ycaQ MCAODC_24835 0.55 -0.7 1,681,122 - ycaQ MCAODC_24835 0.55 +0.7 1,681,177 + ycaQ MCAODC_24835 0.59 -0.6 1,681,181 + ycaQ MCAODC_24835 0.59 -0.3 1,681,181 + ycaQ MCAODC_24835 0.59 +0.1 1,681,182 - ycaQ MCAODC_24835 0.59 -0.9 1,681,238 - ycaQ MCAODC_24835 0.64 -0.6 1,681,245 + ycaQ MCAODC_24835 0.65 -0.4 1,681,276 + ycaQ MCAODC_24835 0.67 +0.3 1,681,286 - ycaQ MCAODC_24835 0.68 -0.3 1,681,286 - ycaQ MCAODC_24835 0.68 +1.3 1,681,286 - ycaQ MCAODC_24835 0.68 -0.5 1,681,286 - ycaQ MCAODC_24835 0.68 -0.7 1,681,296 - ycaQ MCAODC_24835 0.69 -0.4 1,681,296 - ycaQ MCAODC_24835 0.69 -0.3 1,681,296 - ycaQ MCAODC_24835 0.69 +0.5 1,681,342 - ycaQ MCAODC_24835 0.72 -0.7
Or see this region's nucleotide sequence