Strain Fitness in Escherichia coli ECRC101 around MCAODC_19415

Experiment: Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_19400 and MCAODC_19405 are separated by 21 nucleotidesMCAODC_19405 and MCAODC_19410 are separated by 10 nucleotidesMCAODC_19410 and MCAODC_19415 are separated by 11 nucleotidesMCAODC_19415 and MCAODC_19420 overlap by 4 nucleotidesMCAODC_19420 and MCAODC_19425 are separated by 92 nucleotidesMCAODC_19425 and MCAODC_19430 are separated by 23 nucleotidesMCAODC_19430 and marR overlap by 4 nucleotides MCAODC_19400: MCAODC_19400 - DNA-binding protein, at 725,148 to 725,351 _19400 MCAODC_19405: MCAODC_19405 - DUF4761 domain-containing protein, at 725,373 to 725,723 _19405 MCAODC_19410: MCAODC_19410 - hypothetical protein, at 725,734 to 726,012 _19410 MCAODC_19415: MCAODC_19415 - DUF4754 domain-containing protein, at 726,024 to 726,266 _19415 MCAODC_19420: MCAODC_19420 - Membrane protein, at 726,263 to 726,376 _19420 MCAODC_19425: MCAODC_19425 - Phage protein, at 726,469 to 726,885 _19425 MCAODC_19430: MCAODC_19430 - hypothetical protein, at 726,909 to 727,112 _19430 MCAODC_19435: marR - MarR family transcriptional regulator, at 727,109 to 727,375 marR Position (kb) 726 727Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 725.041 kb on + strandat 725.063 kb on - strandat 725.095 kb on - strandat 725.141 kb on + strandat 725.157 kb on - strandat 725.158 kb on + strandat 725.159 kb on - strandat 725.169 kb on - strand, within MCAODC_19400at 725.169 kb on - strand, within MCAODC_19400at 725.187 kb on + strand, within MCAODC_19400at 725.187 kb on + strand, within MCAODC_19400at 725.191 kb on + strand, within MCAODC_19400at 725.191 kb on + strand, within MCAODC_19400at 725.215 kb on + strand, within MCAODC_19400at 725.222 kb on + strand, within MCAODC_19400at 725.223 kb on - strand, within MCAODC_19400at 725.223 kb on - strand, within MCAODC_19400at 725.223 kb on - strand, within MCAODC_19400at 725.232 kb on - strand, within MCAODC_19400at 725.232 kb on - strand, within MCAODC_19400at 725.234 kb on + strand, within MCAODC_19400at 725.234 kb on + strand, within MCAODC_19400at 725.235 kb on - strand, within MCAODC_19400at 725.267 kb on + strand, within MCAODC_19400at 725.309 kb on - strand, within MCAODC_19400at 725.327 kb on - strand, within MCAODC_19400at 725.349 kb on + strandat 725.349 kb on + strandat 725.432 kb on - strand, within MCAODC_19405at 725.472 kb on + strand, within MCAODC_19405at 725.654 kb on - strand, within MCAODC_19405at 725.655 kb on + strand, within MCAODC_19405at 725.655 kb on + strand, within MCAODC_19405at 725.655 kb on + strand, within MCAODC_19405at 725.656 kb on - strand, within MCAODC_19405at 725.656 kb on - strand, within MCAODC_19405at 725.759 kb on + strandat 725.851 kb on + strand, within MCAODC_19410at 726.246 kb on - strandat 726.740 kb on - strand, within MCAODC_19425at 726.747 kb on + strand, within MCAODC_19425at 726.845 kb on + strandat 726.883 kb on + strandat 726.889 kb on + strandat 726.917 kb on + strandat 726.918 kb on - strandat 726.942 kb on - strand, within MCAODC_19430at 727.029 kb on + strand, within MCAODC_19430at 727.029 kb on + strand, within MCAODC_19430at 727.047 kb on + strand, within MCAODC_19430at 727.047 kb on + strand, within MCAODC_19430at 727.047 kb on + strand, within MCAODC_19430at 727.048 kb on - strand, within MCAODC_19430at 727.076 kb on - strand, within MCAODC_19430at 727.093 kb on + strandat 727.093 kb on + strandat 727.196 kb on - strand, within marR

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
remove
725,041 + -1.2
725,063 - -0.7
725,095 - +1.4
725,141 + -0.7
725,157 - -1.1
725,158 + +2.6
725,159 - +1.6
725,169 - MCAODC_19400 0.10 +3.2
725,169 - MCAODC_19400 0.10 +0.0
725,187 + MCAODC_19400 0.19 -2.0
725,187 + MCAODC_19400 0.19 -1.3
725,191 + MCAODC_19400 0.21 -0.7
725,191 + MCAODC_19400 0.21 -1.0
725,215 + MCAODC_19400 0.33 -1.9
725,222 + MCAODC_19400 0.36 -0.6
725,223 - MCAODC_19400 0.37 -0.1
725,223 - MCAODC_19400 0.37 +0.7
725,223 - MCAODC_19400 0.37 +0.6
725,232 - MCAODC_19400 0.41 -1.3
725,232 - MCAODC_19400 0.41 +0.0
725,234 + MCAODC_19400 0.42 -3.7
725,234 + MCAODC_19400 0.42 -0.9
725,235 - MCAODC_19400 0.43 -1.0
725,267 + MCAODC_19400 0.58 -0.2
725,309 - MCAODC_19400 0.79 +0.0
725,327 - MCAODC_19400 0.88 +0.6
725,349 + -4.3
725,349 + +0.6
725,432 - MCAODC_19405 0.17 -0.4
725,472 + MCAODC_19405 0.28 -0.5
725,654 - MCAODC_19405 0.80 +0.3
725,655 + MCAODC_19405 0.80 -0.1
725,655 + MCAODC_19405 0.80 +1.6
725,655 + MCAODC_19405 0.80 -1.2
725,656 - MCAODC_19405 0.81 -1.1
725,656 - MCAODC_19405 0.81 +0.6
725,759 + +2.6
725,851 + MCAODC_19410 0.42 +0.6
726,246 - -0.3
726,740 - MCAODC_19425 0.65 +0.6
726,747 + MCAODC_19425 0.67 -1.8
726,845 + -0.4
726,883 + -1.7
726,889 + -1.3
726,917 + -4.3
726,918 - -2.7
726,942 - MCAODC_19430 0.16 +3.2
727,029 + MCAODC_19430 0.59 -2.2
727,029 + MCAODC_19430 0.59 -2.0
727,047 + MCAODC_19430 0.68 +1.6
727,047 + MCAODC_19430 0.68 -1.7
727,047 + MCAODC_19430 0.68 -3.6
727,048 - MCAODC_19430 0.68 -0.4
727,076 - MCAODC_19430 0.82 +0.5
727,093 + -1.2
727,093 + -3.1
727,196 - marR MCAODC_19435 0.33 +1.6

Or see this region's nucleotide sequence