Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydiR and ydiS are separated by 55 nucleotides ydiS and ydiT overlap by 4 nucleotides ydiT and fadK are separated by 56 nucleotides
MCAODC_18245: ydiR - electron transfer flavoprotein subunit alpha, at 509,384 to 510,322
ydiR
MCAODC_18250: ydiS - putative electron transfer flavoprotein-quinone oxidoreductase YdiS, at 510,378 to 511,667
ydiS
MCAODC_18255: ydiT - Ferredoxin-like protein YdiT, at 511,664 to 511,957
ydiT
MCAODC_18260: fadK - medium-chain fatty-acid--CoA ligase, at 512,014 to 513,555
fadK
Position (kb) 510
511
512 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 509.414 kb on - strand at 509.522 kb on + strand, within ydiR at 509.677 kb on - strand, within ydiR at 509.854 kb on + strand, within ydiR at 509.855 kb on - strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.889 kb on - strand, within ydiR at 510.107 kb on + strand, within ydiR at 510.181 kb on + strand, within ydiR at 510.181 kb on + strand, within ydiR at 510.181 kb on + strand, within ydiR at 510.181 kb on + strand, within ydiR at 510.182 kb on - strand, within ydiR at 510.251 kb on + strand at 510.252 kb on - strand at 510.277 kb on + strand at 510.278 kb on - strand at 510.372 kb on + strand at 510.372 kb on + strand at 510.373 kb on - strand at 510.479 kb on - strand at 510.581 kb on - strand, within ydiS at 510.581 kb on - strand, within ydiS at 510.684 kb on + strand, within ydiS at 510.685 kb on - strand, within ydiS at 510.685 kb on - strand, within ydiS at 510.685 kb on - strand, within ydiS at 510.686 kb on + strand, within ydiS at 510.687 kb on - strand, within ydiS at 510.691 kb on + strand, within ydiS at 510.824 kb on + strand, within ydiS at 510.864 kb on - strand, within ydiS at 510.932 kb on + strand, within ydiS at 510.980 kb on + strand, within ydiS at 511.058 kb on + strand, within ydiS at 511.214 kb on + strand, within ydiS at 511.313 kb on + strand, within ydiS at 511.420 kb on - strand, within ydiS at 511.781 kb on - strand, within ydiT at 511.813 kb on + strand, within ydiT at 511.813 kb on + strand, within ydiT at 511.917 kb on - strand, within ydiT at 511.956 kb on - strand at 512.164 kb on + strand at 512.165 kb on - strand at 512.165 kb on - strand at 512.170 kb on + strand, within fadK at 512.170 kb on + strand, within fadK at 512.171 kb on - strand, within fadK at 512.171 kb on - strand, within fadK at 512.171 kb on - strand, within fadK at 512.173 kb on - strand, within fadK at 512.283 kb on + strand, within fadK at 512.284 kb on - strand, within fadK at 512.287 kb on + strand, within fadK at 512.287 kb on + strand, within fadK at 512.287 kb on + strand, within fadK at 512.322 kb on - strand, within fadK at 512.367 kb on + strand, within fadK at 512.371 kb on - strand, within fadK at 512.395 kb on - strand, within fadK at 512.432 kb on + strand, within fadK at 512.465 kb on + strand, within fadK at 512.466 kb on - strand, within fadK at 512.519 kb on + strand, within fadK at 512.643 kb on + strand, within fadK at 512.649 kb on + strand, within fadK at 512.650 kb on - strand, within fadK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 509,414 - +0.3 509,522 + ydiR MCAODC_18245 0.15 +0.9 509,677 - ydiR MCAODC_18245 0.31 +0.1 509,854 + ydiR MCAODC_18245 0.50 +0.1 509,855 - ydiR MCAODC_18245 0.50 +0.6 509,888 + ydiR MCAODC_18245 0.54 -0.2 509,888 + ydiR MCAODC_18245 0.54 +2.2 509,888 + ydiR MCAODC_18245 0.54 +1.6 509,888 + ydiR MCAODC_18245 0.54 +0.6 509,888 + ydiR MCAODC_18245 0.54 +0.5 509,889 - ydiR MCAODC_18245 0.54 +1.6 510,107 + ydiR MCAODC_18245 0.77 -0.4 510,181 + ydiR MCAODC_18245 0.85 -1.2 510,181 + ydiR MCAODC_18245 0.85 -0.4 510,181 + ydiR MCAODC_18245 0.85 +0.6 510,181 + ydiR MCAODC_18245 0.85 +0.1 510,182 - ydiR MCAODC_18245 0.85 +0.4 510,251 + -0.7 510,252 - +0.4 510,277 + +0.3 510,278 - +0.1 510,372 + -0.9 510,372 + -0.8 510,373 - +1.1 510,479 - +0.1 510,581 - ydiS MCAODC_18250 0.16 +1.6 510,581 - ydiS MCAODC_18250 0.16 +1.1 510,684 + ydiS MCAODC_18250 0.24 -1.2 510,685 - ydiS MCAODC_18250 0.24 +0.6 510,685 - ydiS MCAODC_18250 0.24 +0.1 510,685 - ydiS MCAODC_18250 0.24 -0.8 510,686 + ydiS MCAODC_18250 0.24 +0.6 510,687 - ydiS MCAODC_18250 0.24 -1.7 510,691 + ydiS MCAODC_18250 0.24 +2.4 510,824 + ydiS MCAODC_18250 0.35 -1.8 510,864 - ydiS MCAODC_18250 0.38 +2.2 510,932 + ydiS MCAODC_18250 0.43 +0.1 510,980 + ydiS MCAODC_18250 0.47 +0.1 511,058 + ydiS MCAODC_18250 0.53 -1.4 511,214 + ydiS MCAODC_18250 0.65 +0.8 511,313 + ydiS MCAODC_18250 0.72 +0.6 511,420 - ydiS MCAODC_18250 0.81 +1.6 511,781 - ydiT MCAODC_18255 0.40 -0.9 511,813 + ydiT MCAODC_18255 0.51 +1.6 511,813 + ydiT MCAODC_18255 0.51 +2.6 511,917 - ydiT MCAODC_18255 0.86 +1.1 511,956 - -1.4 512,164 + +2.6 512,165 - -0.6 512,165 - -0.5 512,170 + fadK MCAODC_18260 0.10 +0.4 512,170 + fadK MCAODC_18260 0.10 +1.6 512,171 - fadK MCAODC_18260 0.10 -0.9 512,171 - fadK MCAODC_18260 0.10 +0.6 512,171 - fadK MCAODC_18260 0.10 -2.2 512,173 - fadK MCAODC_18260 0.10 +0.1 512,283 + fadK MCAODC_18260 0.17 +0.7 512,284 - fadK MCAODC_18260 0.18 +0.6 512,287 + fadK MCAODC_18260 0.18 +4.2 512,287 + fadK MCAODC_18260 0.18 +1.1 512,287 + fadK MCAODC_18260 0.18 +0.3 512,322 - fadK MCAODC_18260 0.20 +0.6 512,367 + fadK MCAODC_18260 0.23 +1.6 512,371 - fadK MCAODC_18260 0.23 +1.6 512,395 - fadK MCAODC_18260 0.25 +0.3 512,432 + fadK MCAODC_18260 0.27 -1.0 512,465 + fadK MCAODC_18260 0.29 +0.1 512,466 - fadK MCAODC_18260 0.29 +0.6 512,519 + fadK MCAODC_18260 0.33 +2.0 512,643 + fadK MCAODC_18260 0.41 +0.5 512,649 + fadK MCAODC_18260 0.41 +0.6 512,650 - fadK MCAODC_18260 0.41 +1.6
Or see this region's nucleotide sequence