Strain Fitness in Escherichia coli ECRC101 around MCAODC_17675

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmlc and ynfL are separated by 134 nucleotidesynfL and ynfM are separated by 106 nucleotides MCAODC_17670: mlc - DNA-binding transcriptional repressor Mlc, at 396,414 to 397,634 mlc MCAODC_17675: ynfL - Uncharacterized HTH-type transcriptional regulator YnfL, at 397,769 to 398,662 ynfL MCAODC_17680: ynfM - Inner membrane transport protein YnfM, at 398,769 to 400,022 ynfM Position (kb) 397 398 399Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 396.816 kb on - strand, within mlcat 396.878 kb on - strand, within mlcat 396.885 kb on + strand, within mlcat 396.886 kb on - strand, within mlcat 396.886 kb on - strand, within mlcat 397.144 kb on - strand, within mlcat 397.376 kb on - strand, within mlcat 397.497 kb on - strand, within mlcat 397.674 kb on - strandat 397.718 kb on + strandat 397.916 kb on - strand, within ynfLat 398.122 kb on + strand, within ynfLat 398.493 kb on - strand, within ynfLat 398.561 kb on + strand, within ynfLat 398.635 kb on - strandat 398.662 kb on + strandat 398.729 kb on + strandat 398.730 kb on - strandat 398.730 kb on - strandat 398.731 kb on + strandat 398.731 kb on + strandat 398.731 kb on + strandat 398.751 kb on - strandat 398.778 kb on - strandat 398.926 kb on - strand, within ynfMat 398.926 kb on - strand, within ynfMat 398.939 kb on + strand, within ynfMat 398.939 kb on + strand, within ynfMat 398.990 kb on + strand, within ynfMat 398.991 kb on - strand, within ynfMat 398.991 kb on - strand, within ynfMat 398.991 kb on - strand, within ynfMat 398.991 kb on - strand, within ynfMat 399.038 kb on + strand, within ynfMat 399.039 kb on - strand, within ynfMat 399.095 kb on - strand, within ynfMat 399.261 kb on + strand, within ynfMat 399.261 kb on + strand, within ynfMat 399.261 kb on + strand, within ynfMat 399.261 kb on + strand, within ynfMat 399.261 kb on + strand, within ynfMat 399.301 kb on + strand, within ynfMat 399.302 kb on - strand, within ynfMat 399.305 kb on + strand, within ynfMat 399.441 kb on - strand, within ynfMat 399.441 kb on - strand, within ynfMat 399.453 kb on - strand, within ynfMat 399.543 kb on - strand, within ynfMat 399.547 kb on - strand, within ynfM

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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396,816 - mlc MCAODC_17670 0.33 -0.1
396,878 - mlc MCAODC_17670 0.38 -1.5
396,885 + mlc MCAODC_17670 0.39 +0.6
396,886 - mlc MCAODC_17670 0.39 +1.6
396,886 - mlc MCAODC_17670 0.39 +1.6
397,144 - mlc MCAODC_17670 0.60 +0.1
397,376 - mlc MCAODC_17670 0.79 +0.6
397,497 - mlc MCAODC_17670 0.89 -3.7
397,674 - -0.6
397,718 + +3.2
397,916 - ynfL MCAODC_17675 0.16 +0.1
398,122 + ynfL MCAODC_17675 0.39 +0.4
398,493 - ynfL MCAODC_17675 0.81 +1.6
398,561 + ynfL MCAODC_17675 0.89 +0.6
398,635 - -1.5
398,662 + +1.6
398,729 + +4.0
398,730 - +1.2
398,730 - -0.1
398,731 + +0.6
398,731 + +0.3
398,731 + +1.6
398,751 - -0.1
398,778 - -0.8
398,926 - ynfM MCAODC_17680 0.13 +1.1
398,926 - ynfM MCAODC_17680 0.13 +2.1
398,939 + ynfM MCAODC_17680 0.14 -0.9
398,939 + ynfM MCAODC_17680 0.14 -0.4
398,990 + ynfM MCAODC_17680 0.18 +0.6
398,991 - ynfM MCAODC_17680 0.18 +0.3
398,991 - ynfM MCAODC_17680 0.18 -0.7
398,991 - ynfM MCAODC_17680 0.18 +2.6
398,991 - ynfM MCAODC_17680 0.18 +1.6
399,038 + ynfM MCAODC_17680 0.21 -0.2
399,039 - ynfM MCAODC_17680 0.22 +0.1
399,095 - ynfM MCAODC_17680 0.26 -1.9
399,261 + ynfM MCAODC_17680 0.39 -0.5
399,261 + ynfM MCAODC_17680 0.39 -0.9
399,261 + ynfM MCAODC_17680 0.39 +0.1
399,261 + ynfM MCAODC_17680 0.39 +1.6
399,261 + ynfM MCAODC_17680 0.39 +0.6
399,301 + ynfM MCAODC_17680 0.42 -0.5
399,302 - ynfM MCAODC_17680 0.43 +0.1
399,305 + ynfM MCAODC_17680 0.43 +0.5
399,441 - ynfM MCAODC_17680 0.54 +0.8
399,441 - ynfM MCAODC_17680 0.54 +0.1
399,453 - ynfM MCAODC_17680 0.55 +0.6
399,543 - ynfM MCAODC_17680 0.62 +2.2
399,547 - ynfM MCAODC_17680 0.62 +0.1

Or see this region's nucleotide sequence