Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydfG and ydfH are separated by 88 nucleotides ydfH and ydfZ are separated by 176 nucleotides ydfZ and ydfI are separated by 35 nucleotides
MCAODC_16910: ydfG - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 290,986 to 291,732
ydfG
MCAODC_16915: ydfH - DNA-binding transcriptional regulator YdfH, at 291,821 to 292,507
ydfH
MCAODC_16920: ydfZ - Putative selenoprotein YdfZ, at 292,684 to 292,887
ydfZ
MCAODC_16925: ydfI - Uncharacterized oxidoreductase YdfI, at 292,923 to 294,383
ydfI
Position (kb) 292
293 Strain fitness (log2 ratio) -2
-1
0
1 at 291.703 kb on + strand at 291.737 kb on + strand at 291.872 kb on + strand at 291.878 kb on - strand at 291.988 kb on + strand, within ydfH at 292.130 kb on - strand, within ydfH at 292.325 kb on - strand, within ydfH at 292.416 kb on + strand, within ydfH at 292.416 kb on + strand, within ydfH at 292.505 kb on + strand at 292.556 kb on - strand at 292.629 kb on + strand at 292.631 kb on + strand at 292.693 kb on + strand at 292.693 kb on + strand at 292.972 kb on - strand at 292.981 kb on + strand at 292.982 kb on - strand at 293.322 kb on - strand, within ydfI at 293.322 kb on - strand, within ydfI at 293.322 kb on - strand, within ydfI at 293.324 kb on - strand, within ydfI at 293.474 kb on - strand, within ydfI at 293.534 kb on - strand, within ydfI at 293.712 kb on - strand, within ydfI at 293.745 kb on - strand, within ydfI at 293.770 kb on - strand, within ydfI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 291,703 + +0.9 291,737 + -0.7 291,872 + +0.1 291,878 - +0.7 291,988 + ydfH MCAODC_16915 0.24 +0.1 292,130 - ydfH MCAODC_16915 0.45 -0.5 292,325 - ydfH MCAODC_16915 0.73 +0.6 292,416 + ydfH MCAODC_16915 0.87 -0.9 292,416 + ydfH MCAODC_16915 0.87 -1.3 292,505 + -1.5 292,556 - +1.1 292,629 + +1.7 292,631 + +0.4 292,693 + +1.7 292,693 + -0.7 292,972 - -0.3 292,981 + -1.8 292,982 - -0.8 293,322 - ydfI MCAODC_16925 0.27 -1.0 293,322 - ydfI MCAODC_16925 0.27 -1.3 293,322 - ydfI MCAODC_16925 0.27 +0.7 293,324 - ydfI MCAODC_16925 0.27 +0.9 293,474 - ydfI MCAODC_16925 0.38 -0.7 293,534 - ydfI MCAODC_16925 0.42 -0.3 293,712 - ydfI MCAODC_16925 0.54 +0.5 293,745 - ydfI MCAODC_16925 0.56 +0.7 293,770 - ydfI MCAODC_16925 0.58 -0.0
Or see this region's nucleotide sequence