Strain Fitness in Escherichia coli ECRC101 around MCAODC_16815

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyneG and glsB overlap by 1 nucleotidesglsB and sad are separated by 63 nucleotidessad and yneJ are separated by 100 nucleotides MCAODC_16805: yneG - Uncharacterized protein YneG, at 273,950 to 274,309 yneG MCAODC_16810: glsB - glutaminase B, at 274,309 to 275,235 glsB MCAODC_16815: sad - succinate-semialdehyde dehydrogenase, at 275,299 to 276,687 sad MCAODC_16820: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 276,788 to 277,669 yneJ Position (kb) 275 276 277Strain fitness (log2 ratio) -2 -1 0 1 2 3at 274.510 kb on - strand, within glsBat 274.576 kb on - strand, within glsBat 274.786 kb on - strand, within glsBat 274.861 kb on - strand, within glsBat 274.934 kb on - strand, within glsBat 275.097 kb on + strand, within glsBat 275.103 kb on + strand, within glsBat 275.104 kb on - strand, within glsBat 275.164 kb on - strandat 275.276 kb on - strandat 275.291 kb on - strandat 275.651 kb on + strand, within sadat 275.866 kb on - strand, within sadat 275.965 kb on - strand, within sadat 276.132 kb on - strand, within sadat 276.133 kb on + strand, within sadat 276.134 kb on - strand, within sadat 276.134 kb on - strand, within sadat 276.325 kb on - strand, within sadat 276.352 kb on - strand, within sadat 276.539 kb on - strand, within sadat 276.539 kb on - strand, within sadat 276.539 kb on - strand, within sadat 276.540 kb on + strand, within sadat 276.858 kb on + strandat 276.921 kb on + strand, within yneJat 276.957 kb on + strand, within yneJat 276.974 kb on - strand, within yneJat 277.175 kb on - strand, within yneJat 277.217 kb on - strand, within yneJat 277.238 kb on - strand, within yneJat 277.238 kb on - strand, within yneJat 277.336 kb on + strand, within yneJat 277.498 kb on + strand, within yneJat 277.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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274,510 - glsB MCAODC_16810 0.22 -0.4
274,576 - glsB MCAODC_16810 0.29 -0.4
274,786 - glsB MCAODC_16810 0.51 -0.7
274,861 - glsB MCAODC_16810 0.60 +0.6
274,934 - glsB MCAODC_16810 0.67 +0.6
275,097 + glsB MCAODC_16810 0.85 +3.2
275,103 + glsB MCAODC_16810 0.86 +0.6
275,104 - glsB MCAODC_16810 0.86 +2.6
275,164 - -0.8
275,276 - +0.3
275,291 - -0.6
275,651 + sad MCAODC_16815 0.25 +0.3
275,866 - sad MCAODC_16815 0.41 +0.0
275,965 - sad MCAODC_16815 0.48 -0.5
276,132 - sad MCAODC_16815 0.60 +1.0
276,133 + sad MCAODC_16815 0.60 +1.3
276,134 - sad MCAODC_16815 0.60 -1.4
276,134 - sad MCAODC_16815 0.60 -0.5
276,325 - sad MCAODC_16815 0.74 -0.4
276,352 - sad MCAODC_16815 0.76 +0.1
276,539 - sad MCAODC_16815 0.89 +0.1
276,539 - sad MCAODC_16815 0.89 +1.6
276,539 - sad MCAODC_16815 0.89 -1.4
276,540 + sad MCAODC_16815 0.89 +1.2
276,858 + +2.6
276,921 + yneJ MCAODC_16820 0.15 +1.6
276,957 + yneJ MCAODC_16820 0.19 +1.1
276,974 - yneJ MCAODC_16820 0.21 +0.1
277,175 - yneJ MCAODC_16820 0.44 +0.1
277,217 - yneJ MCAODC_16820 0.49 -1.8
277,238 - yneJ MCAODC_16820 0.51 +2.6
277,238 - yneJ MCAODC_16820 0.51 -1.9
277,336 + yneJ MCAODC_16820 0.62 -0.9
277,498 + yneJ MCAODC_16820 0.80 +0.1
277,622 - -1.7

Or see this region's nucleotide sequence