Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcJ and opgD are separated by 260 nucleotides opgD and ydcH are separated by 139 nucleotides ydcH and rimL are separated by 62 nucleotides rimL and ydcK are separated by 234 nucleotides
MCAODC_16285: ydcJ - Uncharacterized protein YdcJ, at 150,360 to 151,703
ydcJ
MCAODC_16290: opgD - glucan biosynthesis protein OpgD, at 151,964 to 153,583
opgD
MCAODC_16295: ydcH - Uncharacterized protein YdcH, at 153,723 to 153,947
ydcH
MCAODC_16300: rimL - 50S ribosomal protein L7/L12-serine acetyltransferase, at 154,010 to 154,306
rimL
MCAODC_16305: ydcK - YdcK family protein, at 154,541 to 155,521
ydcK
Position (kb) 151
152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 151.043 kb on + strand, within ydcJ at 151.044 kb on - strand, within ydcJ at 151.145 kb on - strand, within ydcJ at 151.275 kb on + strand, within ydcJ at 151.336 kb on + strand, within ydcJ at 151.336 kb on + strand, within ydcJ at 151.508 kb on + strand, within ydcJ at 151.513 kb on - strand, within ydcJ at 151.593 kb on - strand at 151.789 kb on + strand at 151.796 kb on - strand at 151.830 kb on + strand at 151.830 kb on + strand at 151.838 kb on - strand at 151.853 kb on - strand at 151.856 kb on + strand at 151.945 kb on + strand at 151.945 kb on + strand at 151.948 kb on + strand at 152.168 kb on + strand, within opgD at 152.171 kb on - strand, within opgD at 152.176 kb on + strand, within opgD at 152.279 kb on - strand, within opgD at 152.448 kb on + strand, within opgD at 152.448 kb on + strand, within opgD at 152.448 kb on + strand, within opgD at 152.451 kb on + strand, within opgD at 152.451 kb on + strand, within opgD at 152.451 kb on + strand, within opgD at 152.451 kb on + strand, within opgD at 152.452 kb on - strand, within opgD at 152.452 kb on - strand, within opgD at 152.495 kb on + strand, within opgD at 152.495 kb on + strand, within opgD at 152.495 kb on + strand, within opgD at 152.495 kb on + strand, within opgD at 152.496 kb on - strand, within opgD at 152.496 kb on - strand, within opgD at 152.496 kb on - strand, within opgD at 152.537 kb on + strand, within opgD at 152.538 kb on - strand, within opgD at 152.548 kb on + strand, within opgD at 152.549 kb on - strand, within opgD at 152.609 kb on - strand, within opgD at 152.609 kb on - strand, within opgD at 152.621 kb on + strand, within opgD at 152.657 kb on + strand, within opgD at 152.658 kb on - strand, within opgD at 152.658 kb on - strand, within opgD at 152.658 kb on - strand, within opgD at 152.659 kb on + strand, within opgD at 152.735 kb on - strand, within opgD at 152.764 kb on + strand, within opgD at 152.765 kb on - strand, within opgD at 152.973 kb on - strand, within opgD at 152.993 kb on + strand, within opgD at 152.993 kb on + strand, within opgD at 152.995 kb on + strand, within opgD at 153.355 kb on + strand, within opgD at 153.479 kb on + strand at 153.479 kb on + strand at 153.479 kb on + strand at 153.557 kb on + strand at 153.557 kb on + strand at 153.659 kb on + strand at 153.660 kb on - strand at 153.667 kb on + strand at 153.745 kb on + strand at 153.779 kb on + strand, within ydcH at 153.945 kb on + strand at 153.981 kb on - strand at 153.981 kb on - strand at 154.007 kb on - strand at 154.282 kb on + strand at 154.370 kb on + strand at 154.390 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 151,043 + ydcJ MCAODC_16285 0.51 -1.4 151,044 - ydcJ MCAODC_16285 0.51 -0.2 151,145 - ydcJ MCAODC_16285 0.58 -1.6 151,275 + ydcJ MCAODC_16285 0.68 +1.0 151,336 + ydcJ MCAODC_16285 0.73 +2.6 151,336 + ydcJ MCAODC_16285 0.73 +0.6 151,508 + ydcJ MCAODC_16285 0.85 +0.6 151,513 - ydcJ MCAODC_16285 0.86 -0.4 151,593 - +2.2 151,789 + -1.7 151,796 - +0.4 151,830 + -0.0 151,830 + -1.0 151,838 - -0.4 151,853 - -0.4 151,856 + +1.0 151,945 + +0.6 151,945 + -0.7 151,948 + -0.7 152,168 + opgD MCAODC_16290 0.13 -0.4 152,171 - opgD MCAODC_16290 0.13 +1.0 152,176 + opgD MCAODC_16290 0.13 -0.0 152,279 - opgD MCAODC_16290 0.19 +0.6 152,448 + opgD MCAODC_16290 0.30 +0.6 152,448 + opgD MCAODC_16290 0.30 +0.6 152,448 + opgD MCAODC_16290 0.30 -0.7 152,451 + opgD MCAODC_16290 0.30 -0.5 152,451 + opgD MCAODC_16290 0.30 -0.7 152,451 + opgD MCAODC_16290 0.30 +1.0 152,451 + opgD MCAODC_16290 0.30 -0.1 152,452 - opgD MCAODC_16290 0.30 -0.0 152,452 - opgD MCAODC_16290 0.30 +1.0 152,495 + opgD MCAODC_16290 0.33 -0.2 152,495 + opgD MCAODC_16290 0.33 +0.3 152,495 + opgD MCAODC_16290 0.33 -1.4 152,495 + opgD MCAODC_16290 0.33 +0.3 152,496 - opgD MCAODC_16290 0.33 +1.6 152,496 - opgD MCAODC_16290 0.33 -0.7 152,496 - opgD MCAODC_16290 0.33 +0.4 152,537 + opgD MCAODC_16290 0.35 +1.6 152,538 - opgD MCAODC_16290 0.35 +0.3 152,548 + opgD MCAODC_16290 0.36 -1.4 152,549 - opgD MCAODC_16290 0.36 -0.6 152,609 - opgD MCAODC_16290 0.40 -0.5 152,609 - opgD MCAODC_16290 0.40 +1.4 152,621 + opgD MCAODC_16290 0.41 -2.4 152,657 + opgD MCAODC_16290 0.43 +1.0 152,658 - opgD MCAODC_16290 0.43 -0.0 152,658 - opgD MCAODC_16290 0.43 -1.0 152,658 - opgD MCAODC_16290 0.43 -1.5 152,659 + opgD MCAODC_16290 0.43 -1.1 152,735 - opgD MCAODC_16290 0.48 -2.5 152,764 + opgD MCAODC_16290 0.49 -1.6 152,765 - opgD MCAODC_16290 0.49 -0.4 152,973 - opgD MCAODC_16290 0.62 -0.7 152,993 + opgD MCAODC_16290 0.64 -1.4 152,993 + opgD MCAODC_16290 0.64 -1.7 152,995 + opgD MCAODC_16290 0.64 +0.1 153,355 + opgD MCAODC_16290 0.86 +0.3 153,479 + +1.0 153,479 + -0.4 153,479 + -1.9 153,557 + -1.4 153,557 + +0.6 153,659 + +0.6 153,660 - -0.7 153,667 + -0.6 153,745 + -0.9 153,779 + ydcH MCAODC_16295 0.25 +0.4 153,945 + -0.3 153,981 - +0.3 153,981 - -1.9 154,007 - -0.7 154,282 + -1.4 154,370 + +0.4 154,390 + -3.0
Or see this region's nucleotide sequence