Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cmtA and yggP are separated by 14 nucleotides yggP and glpX overlap by 4 nucleotides glpX and fumE are separated by 21 nucleotides
MCAODC_09855: cmtA - PTS mannitol transporter subunit IICB, at 1,965,327 to 1,966,715
cmtA
MCAODC_09860: yggP - Uncharacterized protein YggP, at 1,966,730 to 1,968,007
yggP
MCAODC_09865: glpX - class II fructose-bisphosphatase, at 1,968,004 to 1,968,969
glpX
MCAODC_09870: fumE - fumarase E, at 1,968,991 to 1,969,500
fumE
Position (kb) 1966
1967
1968
1969 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1965.733 kb on + strand, within cmtA at 1965.734 kb on - strand, within cmtA at 1965.734 kb on - strand, within cmtA at 1965.821 kb on + strand, within cmtA at 1965.835 kb on + strand, within cmtA at 1965.836 kb on - strand, within cmtA at 1965.900 kb on - strand, within cmtA at 1965.900 kb on - strand, within cmtA at 1965.921 kb on + strand, within cmtA at 1965.922 kb on - strand, within cmtA at 1965.922 kb on - strand, within cmtA at 1965.960 kb on - strand, within cmtA at 1965.960 kb on - strand, within cmtA at 1965.974 kb on + strand, within cmtA at 1965.975 kb on - strand, within cmtA at 1965.975 kb on - strand, within cmtA at 1966.022 kb on + strand, within cmtA at 1966.023 kb on - strand, within cmtA at 1966.034 kb on + strand, within cmtA at 1966.034 kb on + strand, within cmtA at 1966.105 kb on - strand, within cmtA at 1966.105 kb on - strand, within cmtA at 1966.105 kb on - strand, within cmtA at 1966.113 kb on + strand, within cmtA at 1966.136 kb on + strand, within cmtA at 1966.137 kb on - strand, within cmtA at 1966.139 kb on + strand, within cmtA at 1966.139 kb on + strand, within cmtA at 1966.140 kb on - strand, within cmtA at 1966.140 kb on - strand, within cmtA at 1966.160 kb on + strand, within cmtA at 1966.160 kb on + strand, within cmtA at 1966.186 kb on + strand, within cmtA at 1966.227 kb on - strand, within cmtA at 1966.287 kb on - strand, within cmtA at 1966.292 kb on - strand, within cmtA at 1966.295 kb on + strand, within cmtA at 1966.295 kb on + strand, within cmtA at 1966.296 kb on - strand, within cmtA at 1966.296 kb on - strand, within cmtA at 1966.327 kb on + strand, within cmtA at 1966.437 kb on - strand, within cmtA at 1966.537 kb on + strand, within cmtA at 1966.538 kb on - strand, within cmtA at 1966.545 kb on + strand, within cmtA at 1966.545 kb on + strand, within cmtA at 1966.553 kb on - strand, within cmtA at 1966.587 kb on - strand at 1966.628 kb on + strand at 1966.647 kb on - strand at 1966.682 kb on - strand at 1966.755 kb on - strand at 1966.816 kb on - strand at 1967.055 kb on - strand, within yggP at 1967.081 kb on + strand, within yggP at 1967.081 kb on + strand, within yggP at 1967.082 kb on - strand, within yggP at 1967.082 kb on - strand, within yggP at 1967.083 kb on + strand, within yggP at 1967.084 kb on - strand, within yggP at 1967.084 kb on - strand, within yggP at 1967.084 kb on - strand, within yggP at 1967.084 kb on - strand, within yggP at 1967.089 kb on + strand, within yggP at 1967.121 kb on + strand, within yggP at 1967.121 kb on + strand, within yggP at 1967.170 kb on + strand, within yggP at 1967.170 kb on + strand, within yggP at 1967.171 kb on - strand, within yggP at 1967.171 kb on - strand, within yggP at 1967.171 kb on - strand, within yggP at 1967.182 kb on + strand, within yggP at 1967.204 kb on + strand, within yggP at 1967.205 kb on - strand, within yggP at 1967.219 kb on + strand, within yggP at 1967.220 kb on - strand, within yggP at 1967.226 kb on - strand, within yggP at 1967.226 kb on - strand, within yggP at 1967.318 kb on - strand, within yggP at 1967.328 kb on + strand, within yggP at 1967.329 kb on - strand, within yggP at 1967.329 kb on - strand, within yggP at 1967.329 kb on - strand, within yggP at 1967.329 kb on - strand, within yggP at 1967.329 kb on - strand, within yggP at 1967.382 kb on + strand, within yggP at 1967.383 kb on - strand, within yggP at 1967.435 kb on + strand, within yggP at 1967.435 kb on + strand, within yggP at 1967.436 kb on - strand, within yggP at 1967.436 kb on - strand, within yggP at 1967.436 kb on - strand, within yggP at 1967.436 kb on - strand, within yggP at 1967.519 kb on + strand, within yggP at 1967.645 kb on + strand, within yggP at 1967.646 kb on - strand, within yggP at 1967.646 kb on - strand, within yggP at 1967.669 kb on - strand, within yggP at 1967.669 kb on - strand, within yggP at 1967.730 kb on + strand, within yggP at 1967.730 kb on + strand, within yggP at 1967.731 kb on - strand, within yggP at 1967.828 kb on + strand, within yggP at 1967.828 kb on + strand, within yggP at 1967.829 kb on - strand, within yggP at 1967.829 kb on - strand, within yggP at 1967.829 kb on - strand, within yggP at 1967.830 kb on + strand, within yggP at 1967.899 kb on + strand at 1968.027 kb on - strand at 1968.330 kb on + strand, within glpX at 1968.338 kb on + strand, within glpX at 1968.351 kb on + strand, within glpX at 1968.355 kb on + strand, within glpX at 1968.355 kb on + strand, within glpX at 1968.355 kb on + strand, within glpX at 1968.355 kb on + strand, within glpX at 1968.355 kb on + strand, within glpX at 1968.355 kb on + strand, within glpX at 1968.355 kb on + strand, within glpX at 1968.356 kb on - strand, within glpX at 1968.356 kb on - strand, within glpX at 1968.357 kb on + strand, within glpX at 1968.358 kb on - strand, within glpX at 1968.375 kb on + strand, within glpX at 1968.453 kb on + strand, within glpX at 1968.598 kb on - strand, within glpX at 1968.604 kb on + strand, within glpX at 1968.604 kb on + strand, within glpX at 1968.616 kb on + strand, within glpX at 1968.616 kb on + strand, within glpX at 1968.616 kb on + strand, within glpX at 1968.616 kb on + strand, within glpX at 1968.617 kb on - strand, within glpX at 1968.617 kb on - strand, within glpX at 1968.617 kb on - strand, within glpX at 1968.617 kb on - strand, within glpX at 1968.672 kb on - strand, within glpX at 1968.681 kb on + strand, within glpX at 1968.725 kb on - strand, within glpX at 1968.725 kb on - strand, within glpX at 1968.799 kb on + strand, within glpX at 1968.800 kb on - strand, within glpX at 1968.812 kb on + strand, within glpX at 1968.813 kb on - strand, within glpX at 1968.818 kb on + strand, within glpX at 1968.917 kb on + strand at 1968.918 kb on - strand at 1968.945 kb on + strand at 1968.946 kb on - strand at 1968.946 kb on - strand at 1968.948 kb on + strand at 1968.949 kb on - strand at 1968.949 kb on - strand at 1968.949 kb on - strand at 1968.949 kb on - strand at 1968.950 kb on + strand at 1968.950 kb on + strand at 1968.950 kb on + strand at 1968.950 kb on + strand at 1968.951 kb on - strand at 1968.951 kb on - strand at 1968.953 kb on + strand at 1968.953 kb on + strand at 1968.953 kb on + strand at 1968.954 kb on - strand at 1968.954 kb on - strand at 1968.954 kb on - strand at 1968.964 kb on + strand at 1968.978 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,965,733 + cmtA MCAODC_09855 0.29 -2.1 1,965,734 - cmtA MCAODC_09855 0.29 +0.8 1,965,734 - cmtA MCAODC_09855 0.29 -0.4 1,965,821 + cmtA MCAODC_09855 0.36 +2.6 1,965,835 + cmtA MCAODC_09855 0.37 -1.2 1,965,836 - cmtA MCAODC_09855 0.37 -1.6 1,965,900 - cmtA MCAODC_09855 0.41 -0.2 1,965,900 - cmtA MCAODC_09855 0.41 +0.3 1,965,921 + cmtA MCAODC_09855 0.43 +0.6 1,965,922 - cmtA MCAODC_09855 0.43 -1.2 1,965,922 - cmtA MCAODC_09855 0.43 +0.4 1,965,960 - cmtA MCAODC_09855 0.46 -0.3 1,965,960 - cmtA MCAODC_09855 0.46 +0.6 1,965,974 + cmtA MCAODC_09855 0.47 -0.8 1,965,975 - cmtA MCAODC_09855 0.47 +0.9 1,965,975 - cmtA MCAODC_09855 0.47 -0.1 1,966,022 + cmtA MCAODC_09855 0.50 -0.0 1,966,023 - cmtA MCAODC_09855 0.50 +1.1 1,966,034 + cmtA MCAODC_09855 0.51 -0.9 1,966,034 + cmtA MCAODC_09855 0.51 -1.0 1,966,105 - cmtA MCAODC_09855 0.56 -0.2 1,966,105 - cmtA MCAODC_09855 0.56 +1.0 1,966,105 - cmtA MCAODC_09855 0.56 +1.1 1,966,113 + cmtA MCAODC_09855 0.57 -0.6 1,966,136 + cmtA MCAODC_09855 0.58 -0.9 1,966,137 - cmtA MCAODC_09855 0.58 -1.1 1,966,139 + cmtA MCAODC_09855 0.58 -1.0 1,966,139 + cmtA MCAODC_09855 0.58 +0.4 1,966,140 - cmtA MCAODC_09855 0.59 -0.7 1,966,140 - cmtA MCAODC_09855 0.59 -0.6 1,966,160 + cmtA MCAODC_09855 0.60 -1.0 1,966,160 + cmtA MCAODC_09855 0.60 +0.7 1,966,186 + cmtA MCAODC_09855 0.62 -0.0 1,966,227 - cmtA MCAODC_09855 0.65 -0.8 1,966,287 - cmtA MCAODC_09855 0.69 -1.8 1,966,292 - cmtA MCAODC_09855 0.69 -0.5 1,966,295 + cmtA MCAODC_09855 0.70 -0.7 1,966,295 + cmtA MCAODC_09855 0.70 -1.0 1,966,296 - cmtA MCAODC_09855 0.70 -1.2 1,966,296 - cmtA MCAODC_09855 0.70 -0.6 1,966,327 + cmtA MCAODC_09855 0.72 -0.0 1,966,437 - cmtA MCAODC_09855 0.80 -1.2 1,966,537 + cmtA MCAODC_09855 0.87 +2.4 1,966,538 - cmtA MCAODC_09855 0.87 -0.5 1,966,545 + cmtA MCAODC_09855 0.88 -1.8 1,966,545 + cmtA MCAODC_09855 0.88 -0.4 1,966,553 - cmtA MCAODC_09855 0.88 +0.1 1,966,587 - -1.9 1,966,628 + -0.2 1,966,647 - -0.0 1,966,682 - +1.6 1,966,755 - +0.8 1,966,816 - +3.6 1,967,055 - yggP MCAODC_09860 0.25 -1.7 1,967,081 + yggP MCAODC_09860 0.27 -0.4 1,967,081 + yggP MCAODC_09860 0.27 +1.0 1,967,082 - yggP MCAODC_09860 0.28 -0.4 1,967,082 - yggP MCAODC_09860 0.28 +0.8 1,967,083 + yggP MCAODC_09860 0.28 +1.6 1,967,084 - yggP MCAODC_09860 0.28 -0.2 1,967,084 - yggP MCAODC_09860 0.28 -1.0 1,967,084 - yggP MCAODC_09860 0.28 -0.4 1,967,084 - yggP MCAODC_09860 0.28 -1.0 1,967,089 + yggP MCAODC_09860 0.28 -0.4 1,967,121 + yggP MCAODC_09860 0.31 -1.4 1,967,121 + yggP MCAODC_09860 0.31 -0.4 1,967,170 + yggP MCAODC_09860 0.34 -0.8 1,967,170 + yggP MCAODC_09860 0.34 +0.1 1,967,171 - yggP MCAODC_09860 0.35 -1.6 1,967,171 - yggP MCAODC_09860 0.35 -0.7 1,967,171 - yggP MCAODC_09860 0.35 +2.0 1,967,182 + yggP MCAODC_09860 0.35 -0.8 1,967,204 + yggP MCAODC_09860 0.37 -1.0 1,967,205 - yggP MCAODC_09860 0.37 -1.5 1,967,219 + yggP MCAODC_09860 0.38 -0.2 1,967,220 - yggP MCAODC_09860 0.38 +1.8 1,967,226 - yggP MCAODC_09860 0.39 -0.7 1,967,226 - yggP MCAODC_09860 0.39 +0.0 1,967,318 - yggP MCAODC_09860 0.46 -0.2 1,967,328 + yggP MCAODC_09860 0.47 -1.5 1,967,329 - yggP MCAODC_09860 0.47 +0.1 1,967,329 - yggP MCAODC_09860 0.47 -1.0 1,967,329 - yggP MCAODC_09860 0.47 -0.3 1,967,329 - yggP MCAODC_09860 0.47 +0.7 1,967,329 - yggP MCAODC_09860 0.47 +0.7 1,967,382 + yggP MCAODC_09860 0.51 +0.1 1,967,383 - yggP MCAODC_09860 0.51 +0.2 1,967,435 + yggP MCAODC_09860 0.55 -0.2 1,967,435 + yggP MCAODC_09860 0.55 +0.5 1,967,436 - yggP MCAODC_09860 0.55 +1.0 1,967,436 - yggP MCAODC_09860 0.55 +1.0 1,967,436 - yggP MCAODC_09860 0.55 +0.0 1,967,436 - yggP MCAODC_09860 0.55 -0.6 1,967,519 + yggP MCAODC_09860 0.62 -1.1 1,967,645 + yggP MCAODC_09860 0.72 -0.9 1,967,646 - yggP MCAODC_09860 0.72 -0.2 1,967,646 - yggP MCAODC_09860 0.72 -0.4 1,967,669 - yggP MCAODC_09860 0.73 -1.6 1,967,669 - yggP MCAODC_09860 0.73 -0.2 1,967,730 + yggP MCAODC_09860 0.78 +0.5 1,967,730 + yggP MCAODC_09860 0.78 +1.6 1,967,731 - yggP MCAODC_09860 0.78 +0.7 1,967,828 + yggP MCAODC_09860 0.86 -0.1 1,967,828 + yggP MCAODC_09860 0.86 -0.4 1,967,829 - yggP MCAODC_09860 0.86 -0.9 1,967,829 - yggP MCAODC_09860 0.86 -1.2 1,967,829 - yggP MCAODC_09860 0.86 -0.8 1,967,830 + yggP MCAODC_09860 0.86 -0.6 1,967,899 + -0.4 1,968,027 - +0.6 1,968,330 + glpX MCAODC_09865 0.34 -0.7 1,968,338 + glpX MCAODC_09865 0.35 +1.0 1,968,351 + glpX MCAODC_09865 0.36 -1.2 1,968,355 + glpX MCAODC_09865 0.36 +0.4 1,968,355 + glpX MCAODC_09865 0.36 +0.7 1,968,355 + glpX MCAODC_09865 0.36 -0.5 1,968,355 + glpX MCAODC_09865 0.36 -0.8 1,968,355 + glpX MCAODC_09865 0.36 +0.9 1,968,355 + glpX MCAODC_09865 0.36 -0.2 1,968,355 + glpX MCAODC_09865 0.36 +0.6 1,968,356 - glpX MCAODC_09865 0.36 +0.5 1,968,356 - glpX MCAODC_09865 0.36 -0.8 1,968,357 + glpX MCAODC_09865 0.37 +0.8 1,968,358 - glpX MCAODC_09865 0.37 +0.5 1,968,375 + glpX MCAODC_09865 0.38 +2.6 1,968,453 + glpX MCAODC_09865 0.46 -1.2 1,968,598 - glpX MCAODC_09865 0.61 +1.0 1,968,604 + glpX MCAODC_09865 0.62 -0.0 1,968,604 + glpX MCAODC_09865 0.62 +1.3 1,968,616 + glpX MCAODC_09865 0.63 -2.4 1,968,616 + glpX MCAODC_09865 0.63 +0.6 1,968,616 + glpX MCAODC_09865 0.63 -1.4 1,968,616 + glpX MCAODC_09865 0.63 +2.1 1,968,617 - glpX MCAODC_09865 0.63 -1.2 1,968,617 - glpX MCAODC_09865 0.63 -0.8 1,968,617 - glpX MCAODC_09865 0.63 -0.0 1,968,617 - glpX MCAODC_09865 0.63 +0.6 1,968,672 - glpX MCAODC_09865 0.69 -0.8 1,968,681 + glpX MCAODC_09865 0.70 -0.3 1,968,725 - glpX MCAODC_09865 0.75 +0.3 1,968,725 - glpX MCAODC_09865 0.75 +0.1 1,968,799 + glpX MCAODC_09865 0.82 -2.1 1,968,800 - glpX MCAODC_09865 0.82 +0.5 1,968,812 + glpX MCAODC_09865 0.84 -1.1 1,968,813 - glpX MCAODC_09865 0.84 +0.4 1,968,818 + glpX MCAODC_09865 0.84 -0.1 1,968,917 + +0.3 1,968,918 - -1.0 1,968,945 + -1.2 1,968,946 - -0.3 1,968,946 - +0.8 1,968,948 + -0.4 1,968,949 - -0.4 1,968,949 - -1.4 1,968,949 - +1.1 1,968,949 - -0.1 1,968,950 + -0.8 1,968,950 + +1.8 1,968,950 + -0.0 1,968,950 + -0.1 1,968,951 - -0.2 1,968,951 - +0.3 1,968,953 + +0.6 1,968,953 + -1.0 1,968,953 + +0.6 1,968,954 - +0.4 1,968,954 - -1.0 1,968,954 - +0.1 1,968,964 + -0.1 1,968,978 + +1.7
Or see this region's nucleotide sequence