Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hofM and hofN overlap by 17 nucleotides hofN and hofO overlap by 17 nucleotides hofO and hofP overlap by 11 nucleotides hofP and hofQ overlap by 59 nucleotides
MCAODC_07615: hofM - DNA utilization protein HofM, at 1,551,249 to 1,552,043
hofM
MCAODC_07620: hofN - Putative DNA utilization protein HofN, at 1,552,027 to 1,552,566
hofN
MCAODC_07625: hofO - DNA utilization protein HofO, at 1,552,550 to 1,552,990
hofO
MCAODC_07630: hofP - DNA utilization protein HofP, at 1,552,980 to 1,553,384
hofP
MCAODC_07635: hofQ - DNA uptake porin HofQ, at 1,553,326 to 1,554,534
hofQ
Position (kb) 1552
1553
1554 Strain fitness (log2 ratio) -1
0
1
2 at 1552.022 kb on + strand at 1552.022 kb on + strand at 1552.139 kb on + strand, within hofN at 1552.139 kb on + strand, within hofN at 1552.140 kb on - strand, within hofN at 1552.142 kb on + strand, within hofN at 1552.142 kb on + strand, within hofN at 1552.142 kb on + strand, within hofN at 1552.143 kb on - strand, within hofN at 1552.220 kb on + strand, within hofN at 1552.220 kb on + strand, within hofN at 1552.343 kb on + strand, within hofN at 1552.371 kb on - strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.407 kb on + strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.408 kb on - strand, within hofN at 1552.533 kb on - strand at 1552.533 kb on - strand at 1552.629 kb on + strand, within hofO at 1552.629 kb on + strand, within hofO at 1552.630 kb on - strand, within hofO at 1552.630 kb on - strand, within hofO at 1552.630 kb on - strand, within hofO at 1552.633 kb on + strand, within hofO at 1552.633 kb on + strand, within hofO at 1552.633 kb on + strand, within hofO at 1552.634 kb on - strand, within hofO at 1552.634 kb on - strand, within hofO at 1552.634 kb on - strand, within hofO at 1552.634 kb on - strand, within hofO at 1552.988 kb on + strand at 1553.009 kb on + strand at 1553.010 kb on - strand at 1553.010 kb on - strand at 1553.010 kb on - strand at 1553.026 kb on + strand, within hofP at 1553.027 kb on - strand, within hofP at 1553.049 kb on - strand, within hofP at 1553.065 kb on + strand, within hofP at 1553.066 kb on - strand, within hofP at 1553.084 kb on + strand, within hofP at 1553.085 kb on - strand, within hofP at 1553.221 kb on + strand, within hofP at 1553.221 kb on + strand, within hofP at 1553.227 kb on + strand, within hofP at 1553.228 kb on - strand, within hofP at 1553.230 kb on + strand, within hofP at 1553.231 kb on - strand, within hofP at 1553.231 kb on - strand, within hofP at 1553.291 kb on + strand, within hofP at 1553.291 kb on + strand, within hofP at 1553.318 kb on + strand, within hofP at 1553.319 kb on - strand, within hofP at 1553.474 kb on + strand, within hofQ at 1553.474 kb on + strand, within hofQ at 1553.475 kb on - strand, within hofQ at 1553.475 kb on - strand, within hofQ at 1553.475 kb on - strand, within hofQ at 1553.480 kb on + strand, within hofQ at 1553.480 kb on + strand, within hofQ at 1553.480 kb on + strand, within hofQ at 1553.480 kb on + strand, within hofQ at 1553.481 kb on - strand, within hofQ at 1553.481 kb on - strand, within hofQ at 1553.507 kb on + strand, within hofQ at 1553.516 kb on + strand, within hofQ at 1553.658 kb on + strand, within hofQ at 1553.659 kb on - strand, within hofQ at 1553.662 kb on - strand, within hofQ at 1553.662 kb on - strand, within hofQ at 1553.672 kb on - strand, within hofQ at 1553.712 kb on - strand, within hofQ at 1553.712 kb on - strand, within hofQ at 1553.765 kb on + strand, within hofQ at 1553.853 kb on + strand, within hofQ at 1553.853 kb on + strand, within hofQ at 1553.853 kb on + strand, within hofQ at 1553.854 kb on - strand, within hofQ at 1553.854 kb on - strand, within hofQ at 1553.854 kb on - strand, within hofQ at 1553.866 kb on - strand, within hofQ at 1553.889 kb on - strand, within hofQ at 1553.997 kb on + strand, within hofQ at 1553.997 kb on + strand, within hofQ at 1554.120 kb on + strand, within hofQ at 1554.121 kb on - strand, within hofQ at 1554.121 kb on - strand, within hofQ at 1554.186 kb on + strand, within hofQ at 1554.186 kb on + strand, within hofQ at 1554.187 kb on - strand, within hofQ at 1554.227 kb on + strand, within hofQ at 1554.228 kb on - strand, within hofQ at 1554.254 kb on + strand, within hofQ at 1554.254 kb on + strand, within hofQ at 1554.288 kb on - strand, within hofQ at 1554.288 kb on - strand, within hofQ at 1554.288 kb on - strand, within hofQ at 1554.288 kb on - strand, within hofQ at 1554.288 kb on - strand, within hofQ at 1554.321 kb on + strand, within hofQ at 1554.321 kb on + strand, within hofQ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,552,022 + +1.5 1,552,022 + -0.0 1,552,139 + hofN MCAODC_07620 0.21 +0.0 1,552,139 + hofN MCAODC_07620 0.21 +1.2 1,552,140 - hofN MCAODC_07620 0.21 +1.5 1,552,142 + hofN MCAODC_07620 0.21 +0.9 1,552,142 + hofN MCAODC_07620 0.21 -1.3 1,552,142 + hofN MCAODC_07620 0.21 -0.3 1,552,143 - hofN MCAODC_07620 0.21 +0.5 1,552,220 + hofN MCAODC_07620 0.36 +0.4 1,552,220 + hofN MCAODC_07620 0.36 -0.2 1,552,343 + hofN MCAODC_07620 0.59 -0.6 1,552,371 - hofN MCAODC_07620 0.64 -0.8 1,552,407 + hofN MCAODC_07620 0.70 +0.4 1,552,407 + hofN MCAODC_07620 0.70 +0.7 1,552,407 + hofN MCAODC_07620 0.70 -0.6 1,552,407 + hofN MCAODC_07620 0.70 -0.2 1,552,407 + hofN MCAODC_07620 0.70 -0.3 1,552,408 - hofN MCAODC_07620 0.71 -0.9 1,552,408 - hofN MCAODC_07620 0.71 +2.3 1,552,408 - hofN MCAODC_07620 0.71 -0.4 1,552,408 - hofN MCAODC_07620 0.71 -0.2 1,552,408 - hofN MCAODC_07620 0.71 +0.1 1,552,533 - -0.6 1,552,533 - +0.3 1,552,629 + hofO MCAODC_07625 0.18 -0.6 1,552,629 + hofO MCAODC_07625 0.18 -0.5 1,552,630 - hofO MCAODC_07625 0.18 -0.4 1,552,630 - hofO MCAODC_07625 0.18 -0.3 1,552,630 - hofO MCAODC_07625 0.18 -0.3 1,552,633 + hofO MCAODC_07625 0.19 +0.2 1,552,633 + hofO MCAODC_07625 0.19 -0.6 1,552,633 + hofO MCAODC_07625 0.19 +0.2 1,552,634 - hofO MCAODC_07625 0.19 +0.4 1,552,634 - hofO MCAODC_07625 0.19 -0.0 1,552,634 - hofO MCAODC_07625 0.19 -1.0 1,552,634 - hofO MCAODC_07625 0.19 -0.0 1,552,988 + -0.0 1,553,009 + +1.5 1,553,010 - +0.6 1,553,010 - -0.4 1,553,010 - +1.0 1,553,026 + hofP MCAODC_07630 0.11 -0.2 1,553,027 - hofP MCAODC_07630 0.12 -1.0 1,553,049 - hofP MCAODC_07630 0.17 +1.0 1,553,065 + hofP MCAODC_07630 0.21 -1.5 1,553,066 - hofP MCAODC_07630 0.21 +0.0 1,553,084 + hofP MCAODC_07630 0.26 +0.7 1,553,085 - hofP MCAODC_07630 0.26 -0.8 1,553,221 + hofP MCAODC_07630 0.60 -0.4 1,553,221 + hofP MCAODC_07630 0.60 -0.4 1,553,227 + hofP MCAODC_07630 0.61 +0.3 1,553,228 - hofP MCAODC_07630 0.61 -1.2 1,553,230 + hofP MCAODC_07630 0.62 -0.3 1,553,231 - hofP MCAODC_07630 0.62 -0.0 1,553,231 - hofP MCAODC_07630 0.62 -0.1 1,553,291 + hofP MCAODC_07630 0.77 +0.3 1,553,291 + hofP MCAODC_07630 0.77 -0.0 1,553,318 + hofP MCAODC_07630 0.83 -0.0 1,553,319 - hofP MCAODC_07630 0.84 +1.5 1,553,474 + hofQ MCAODC_07635 0.12 -1.4 1,553,474 + hofQ MCAODC_07635 0.12 -0.7 1,553,475 - hofQ MCAODC_07635 0.12 -0.8 1,553,475 - hofQ MCAODC_07635 0.12 -1.5 1,553,475 - hofQ MCAODC_07635 0.12 -0.4 1,553,480 + hofQ MCAODC_07635 0.13 -0.5 1,553,480 + hofQ MCAODC_07635 0.13 -0.1 1,553,480 + hofQ MCAODC_07635 0.13 -0.7 1,553,480 + hofQ MCAODC_07635 0.13 -0.3 1,553,481 - hofQ MCAODC_07635 0.13 +1.0 1,553,481 - hofQ MCAODC_07635 0.13 -0.5 1,553,507 + hofQ MCAODC_07635 0.15 +2.5 1,553,516 + hofQ MCAODC_07635 0.16 -0.8 1,553,658 + hofQ MCAODC_07635 0.27 +0.9 1,553,659 - hofQ MCAODC_07635 0.28 -0.2 1,553,662 - hofQ MCAODC_07635 0.28 -0.7 1,553,662 - hofQ MCAODC_07635 0.28 -1.0 1,553,672 - hofQ MCAODC_07635 0.29 +0.5 1,553,712 - hofQ MCAODC_07635 0.32 -0.4 1,553,712 - hofQ MCAODC_07635 0.32 -0.2 1,553,765 + hofQ MCAODC_07635 0.36 -0.5 1,553,853 + hofQ MCAODC_07635 0.44 +0.3 1,553,853 + hofQ MCAODC_07635 0.44 -1.3 1,553,853 + hofQ MCAODC_07635 0.44 -0.8 1,553,854 - hofQ MCAODC_07635 0.44 +0.0 1,553,854 - hofQ MCAODC_07635 0.44 -0.6 1,553,854 - hofQ MCAODC_07635 0.44 -0.8 1,553,866 - hofQ MCAODC_07635 0.45 +0.3 1,553,889 - hofQ MCAODC_07635 0.47 -0.1 1,553,997 + hofQ MCAODC_07635 0.56 -1.3 1,553,997 + hofQ MCAODC_07635 0.56 -0.2 1,554,120 + hofQ MCAODC_07635 0.66 -0.8 1,554,121 - hofQ MCAODC_07635 0.66 -1.0 1,554,121 - hofQ MCAODC_07635 0.66 -0.2 1,554,186 + hofQ MCAODC_07635 0.71 -0.4 1,554,186 + hofQ MCAODC_07635 0.71 +0.9 1,554,187 - hofQ MCAODC_07635 0.71 +0.0 1,554,227 + hofQ MCAODC_07635 0.75 +0.0 1,554,228 - hofQ MCAODC_07635 0.75 -0.0 1,554,254 + hofQ MCAODC_07635 0.77 -0.7 1,554,254 + hofQ MCAODC_07635 0.77 +1.2 1,554,288 - hofQ MCAODC_07635 0.80 +1.5 1,554,288 - hofQ MCAODC_07635 0.80 -0.5 1,554,288 - hofQ MCAODC_07635 0.80 -0.2 1,554,288 - hofQ MCAODC_07635 0.80 -0.0 1,554,288 - hofQ MCAODC_07635 0.80 +0.2 1,554,321 + hofQ MCAODC_07635 0.82 -0.9 1,554,321 + hofQ MCAODC_07635 0.82 -0.5
Or see this region's nucleotide sequence