Strain Fitness in Escherichia coli ECRC101 around MCAODC_07055

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
1,432,827	+	nikE	MCAODC_07045	0.55	+0.6
1,432,828	-	nikE	MCAODC_07045	0.56	+0.2
1,432,828	-	nikE	MCAODC_07045	0.56	+0.9
1,432,833	+	nikE	MCAODC_07045	0.57	+0.3
1,432,833	+	nikE	MCAODC_07045	0.57	-0.4
1,432,833	+	nikE	MCAODC_07045	0.57	+0.0
1,432,930	+	nikE	MCAODC_07045	0.81	+0.0
1,432,930	+	nikE	MCAODC_07045	0.81	-0.1
1,432,930	+	nikE	MCAODC_07045	0.81	-0.8
1,432,930	+	nikE	MCAODC_07045	0.81	+0.2
1,432,930	+	nikE	MCAODC_07045	0.81	-0.1
1,432,930	+	nikE	MCAODC_07045	0.81	+0.8
1,432,930	+	nikE	MCAODC_07045	0.81	-0.6
1,432,931	-	nikE	MCAODC_07045	0.81	-0.8
1,432,931	-	nikE	MCAODC_07045	0.81	+0.3
1,432,931	-	nikE	MCAODC_07045	0.81	-2.9
1,432,931	-	nikE	MCAODC_07045	0.81	+0.2
1,432,932	+	nikE	MCAODC_07045	0.82	+0.4
1,432,933	-	nikE	MCAODC_07045	0.82	+1.3
1,432,971	-				-0.3
1,433,056	+				+1.3
1,433,069	-				-1.3
1,433,098	+	nikE	MCAODC_07050	0.11	+0.0
1,433,099	-	nikE	MCAODC_07050	0.11	+0.6
1,433,182	+	nikE	MCAODC_07050	0.21	+0.1
1,433,182	+	nikE	MCAODC_07050	0.21	-0.6
1,433,182	+	nikE	MCAODC_07050	0.21	+1.4
1,433,182	+	nikE	MCAODC_07050	0.21	-0.5
1,433,183	-	nikE	MCAODC_07050	0.21	-0.4
1,433,183	-	nikE	MCAODC_07050	0.21	-0.1
1,433,183	-	nikE	MCAODC_07050	0.21	-0.1
1,433,183	-	nikE	MCAODC_07050	0.21	+0.5
1,433,227	+	nikE	MCAODC_07050	0.27	-0.9
1,433,260	+	nikE	MCAODC_07050	0.31	+0.8
1,433,278	-	nikE	MCAODC_07050	0.33	-2.1
1,433,278	-	nikE	MCAODC_07050	0.33	-0.1
1,433,362	+	nikE	MCAODC_07050	0.43	+0.8
1,433,536	+	nikE	MCAODC_07050	0.65	+0.0
1,433,537	-	nikE	MCAODC_07050	0.65	+0.3
1,433,565	+	nikE	MCAODC_07050	0.69	-0.5
1,433,610	+	nikE	MCAODC_07050	0.74	-1.7
1,433,610	+	nikE	MCAODC_07050	0.74	-0.7
1,433,611	-	nikE	MCAODC_07050	0.74	+1.3
1,433,613	+	nikE	MCAODC_07050	0.75	-0.4
1,433,614	-	nikE	MCAODC_07050	0.75	-0.1
1,433,614	-	nikE	MCAODC_07050	0.75	-0.3
1,433,614	-	nikE	MCAODC_07050	0.75	+0.5
1,433,635	+	nikE	MCAODC_07050	0.77	+0.1
1,433,635	+	nikE	MCAODC_07050	0.77	-0.9
1,433,636	-	nikE	MCAODC_07050	0.77	+0.7
1,433,731	-	nikE	MCAODC_07050	0.89	-0.7
1,433,806	-				-0.8
1,433,809	+				-1.2
1,433,871	+				-0.5
1,433,946	+	nikD	MCAODC_07055	0.17	+0.2
1,433,947	-	nikD	MCAODC_07055	0.17	-0.1
1,433,947	-	nikD	MCAODC_07055	0.17	-0.2
1,434,057	+	nikD	MCAODC_07055	0.32	+1.5
1,434,058	-	nikD	MCAODC_07055	0.32	-0.6
1,434,095	+	nikD	MCAODC_07055	0.37	-2.1
1,434,213	+	nikD	MCAODC_07055	0.52	-0.5
1,434,213	+	nikD	MCAODC_07055	0.52	-1.8
1,434,213	+	nikD	MCAODC_07055	0.52	-0.1
1,434,302	+	nikD	MCAODC_07055	0.64	-0.7
1,434,303	-	nikD	MCAODC_07055	0.64	+2.3
1,434,554	+				-1.1
1,434,554	+				-2.6
1,434,554	+				-0.2
1,434,554	+				+0.8
1,434,554	+				-0.8
1,434,555	-				-1.4
1,434,555	-				+1.5
1,434,558	+				-0.7
1,434,558	+				+0.5
1,434,558	+				+0.5
1,434,579	+				-0.2
1,434,580	-				-0.3
1,434,709	+	nikC	MCAODC_07060	0.16	+0.1
1,434,709	+	nikC	MCAODC_07060	0.16	+0.2
1,434,709	+	nikC	MCAODC_07060	0.16	+0.7
1,434,709	+	nikC	MCAODC_07060	0.16	-1.3
1,434,709	+	nikC	MCAODC_07060	0.16	-1.1
1,434,709	+	nikC	MCAODC_07060	0.16	+0.5
1,434,710	-	nikC	MCAODC_07060	0.16	+1.5
1,434,710	-	nikC	MCAODC_07060	0.16	-0.1
1,434,711	+	nikC	MCAODC_07060	0.16	-0.1
1,434,711	+	nikC	MCAODC_07060	0.16	-0.1
1,434,712	-	nikC	MCAODC_07060	0.16	-0.1
1,434,805	+	nikC	MCAODC_07060	0.27	-0.1
1,434,806	-	nikC	MCAODC_07060	0.27	-0.2
1,434,966	+	nikC	MCAODC_07060	0.47	+0.9
1,434,998	-	nikC	MCAODC_07060	0.50	-0.4
1,435,001	+	nikC	MCAODC_07060	0.51	+0.5
1,435,001	+	nikC	MCAODC_07060	0.51	-1.4
1,435,002	-	nikC	MCAODC_07060	0.51	+0.0
1,435,002	-	nikC	MCAODC_07060	0.51	-0.1
1,435,002	-	nikC	MCAODC_07060	0.51	-0.5
1,435,036	+	nikC	MCAODC_07060	0.55	+0.1
1,435,037	-	nikC	MCAODC_07060	0.55	+0.2
1,435,070	-	nikC	MCAODC_07060	0.59	-1.8
1,435,070	-	nikC	MCAODC_07060	0.59	+1.0
1,435,093	+	nikC	MCAODC_07060	0.62	+0.6
1,435,138	+	nikC	MCAODC_07060	0.67	-0.4
1,435,235	+	nikC	MCAODC_07060	0.79	+2.1
1,435,311	+	nikC	MCAODC_07060	0.88	+0.8
1,435,480	-				+1.5
1,435,480	-				+0.4
1,435,480	-				+1.5
1,435,513	-	nikB	MCAODC_07065	0.11	-0.2