Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cbrA and yidR are separated by 100 nucleotides yidR and yidQ are separated by 1 nucleotides yidQ and ibpA are separated by 377 nucleotides
MCAODC_05565: cbrA - colicin M resistance protein, at 1,124,746 to 1,125,810
cbrA
MCAODC_05570: yidR - Uncharacterized protein YidR, at 1,125,911 to 1,127,125
yidR
MCAODC_05575: yidQ - Uncharacterized protein YidQ, at 1,127,127 to 1,127,387
yidQ
MCAODC_05580: ibpA - heat shock chaperone IbpA, at 1,127,765 to 1,128,178
ibpA
Position (kb) 1125
1126
1127
1128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1124.948 kb on + strand, within cbrA at 1124.948 kb on + strand, within cbrA at 1124.949 kb on - strand, within cbrA at 1124.949 kb on - strand, within cbrA at 1124.949 kb on - strand, within cbrA at 1124.949 kb on - strand, within cbrA at 1124.954 kb on - strand, within cbrA at 1125.052 kb on + strand, within cbrA at 1125.052 kb on + strand, within cbrA at 1125.053 kb on - strand, within cbrA at 1125.053 kb on - strand, within cbrA at 1125.053 kb on - strand, within cbrA at 1125.175 kb on - strand, within cbrA at 1125.206 kb on + strand, within cbrA at 1125.290 kb on + strand, within cbrA at 1125.290 kb on + strand, within cbrA at 1125.291 kb on - strand, within cbrA at 1125.291 kb on - strand, within cbrA at 1125.291 kb on - strand, within cbrA at 1125.291 kb on - strand, within cbrA at 1125.291 kb on - strand, within cbrA at 1125.291 kb on - strand, within cbrA at 1125.294 kb on + strand, within cbrA at 1125.295 kb on - strand, within cbrA at 1125.314 kb on + strand, within cbrA at 1125.321 kb on - strand, within cbrA at 1125.363 kb on - strand, within cbrA at 1125.372 kb on + strand, within cbrA at 1125.375 kb on + strand, within cbrA at 1125.375 kb on + strand, within cbrA at 1125.375 kb on + strand, within cbrA at 1125.375 kb on + strand, within cbrA at 1125.417 kb on + strand, within cbrA at 1125.418 kb on - strand, within cbrA at 1125.418 kb on - strand, within cbrA at 1125.418 kb on - strand, within cbrA at 1125.418 kb on - strand, within cbrA at 1125.418 kb on - strand, within cbrA at 1125.418 kb on - strand, within cbrA at 1125.458 kb on + strand, within cbrA at 1125.516 kb on + strand, within cbrA at 1125.516 kb on + strand, within cbrA at 1125.517 kb on - strand, within cbrA at 1125.519 kb on + strand, within cbrA at 1125.519 kb on + strand, within cbrA at 1125.525 kb on + strand, within cbrA at 1125.525 kb on + strand, within cbrA at 1125.527 kb on + strand, within cbrA at 1125.528 kb on - strand, within cbrA at 1125.528 kb on - strand, within cbrA at 1125.528 kb on - strand, within cbrA at 1125.528 kb on - strand, within cbrA at 1125.528 kb on - strand, within cbrA at 1125.539 kb on + strand, within cbrA at 1125.539 kb on + strand, within cbrA at 1125.540 kb on - strand, within cbrA at 1125.540 kb on - strand, within cbrA at 1125.540 kb on - strand, within cbrA at 1125.540 kb on - strand, within cbrA at 1125.544 kb on - strand, within cbrA at 1125.636 kb on + strand, within cbrA at 1125.745 kb on + strand at 1125.745 kb on + strand at 1125.845 kb on + strand at 1125.846 kb on - strand at 1125.846 kb on - strand at 1125.846 kb on - strand at 1125.846 kb on - strand at 1125.874 kb on + strand at 1125.874 kb on + strand at 1125.874 kb on + strand at 1125.874 kb on + strand at 1125.874 kb on + strand at 1125.875 kb on - strand at 1125.875 kb on - strand at 1125.875 kb on - strand at 1125.897 kb on - strand at 1125.921 kb on + strand at 1125.955 kb on + strand at 1125.955 kb on + strand at 1125.955 kb on + strand at 1125.956 kb on - strand at 1125.961 kb on + strand at 1125.990 kb on + strand at 1125.991 kb on - strand at 1125.991 kb on - strand at 1126.072 kb on + strand, within yidR at 1126.073 kb on - strand, within yidR at 1126.073 kb on - strand, within yidR at 1126.136 kb on + strand, within yidR at 1126.137 kb on - strand, within yidR at 1126.137 kb on - strand, within yidR at 1126.182 kb on - strand, within yidR at 1126.334 kb on - strand, within yidR at 1126.337 kb on + strand, within yidR at 1126.337 kb on + strand, within yidR at 1126.337 kb on + strand, within yidR at 1126.337 kb on + strand, within yidR at 1126.337 kb on + strand, within yidR at 1126.338 kb on - strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.350 kb on + strand, within yidR at 1126.351 kb on - strand, within yidR at 1126.351 kb on - strand, within yidR at 1126.351 kb on - strand, within yidR at 1126.351 kb on - strand, within yidR at 1126.351 kb on - strand, within yidR at 1126.445 kb on + strand, within yidR at 1126.446 kb on - strand, within yidR at 1126.446 kb on - strand, within yidR at 1126.543 kb on - strand, within yidR at 1126.565 kb on - strand, within yidR at 1126.623 kb on + strand, within yidR at 1126.669 kb on - strand, within yidR at 1126.789 kb on + strand, within yidR at 1126.818 kb on + strand, within yidR at 1126.855 kb on + strand, within yidR at 1126.855 kb on + strand, within yidR at 1126.921 kb on + strand, within yidR at 1126.922 kb on - strand, within yidR at 1126.922 kb on - strand, within yidR at 1127.006 kb on + strand at 1127.006 kb on + strand at 1127.006 kb on + strand at 1127.006 kb on + strand at 1127.006 kb on + strand at 1127.133 kb on - strand at 1127.133 kb on - strand at 1127.242 kb on - strand, within yidQ at 1127.297 kb on + strand, within yidQ at 1127.357 kb on - strand, within yidQ at 1127.427 kb on + strand at 1127.427 kb on + strand at 1127.428 kb on - strand at 1127.428 kb on - strand at 1127.439 kb on + strand at 1127.440 kb on - strand at 1127.454 kb on + strand at 1127.454 kb on + strand at 1127.455 kb on - strand at 1127.460 kb on - strand at 1127.460 kb on - strand at 1127.462 kb on + strand at 1127.463 kb on - strand at 1127.501 kb on + strand at 1127.501 kb on + strand at 1127.502 kb on - strand at 1127.502 kb on - strand at 1127.502 kb on - strand at 1127.502 kb on - strand at 1127.502 kb on - strand at 1127.502 kb on - strand at 1127.523 kb on + strand at 1127.523 kb on + strand at 1127.523 kb on + strand at 1127.524 kb on - strand at 1127.524 kb on - strand at 1127.535 kb on + strand at 1127.535 kb on + strand at 1127.536 kb on - strand at 1127.564 kb on + strand at 1127.590 kb on + strand at 1127.590 kb on + strand at 1127.590 kb on + strand at 1127.591 kb on - strand at 1127.597 kb on + strand at 1127.598 kb on - strand at 1127.598 kb on - strand at 1127.598 kb on - strand at 1127.604 kb on + strand at 1127.604 kb on + strand at 1127.605 kb on - strand at 1127.630 kb on - strand at 1127.671 kb on - strand at 1127.705 kb on + strand at 1127.733 kb on + strand at 1127.733 kb on + strand at 1127.734 kb on - strand at 1127.757 kb on + strand at 1127.757 kb on + strand at 1127.757 kb on + strand at 1127.757 kb on + strand at 1127.758 kb on - strand at 1127.758 kb on - strand at 1127.758 kb on - strand at 1127.758 kb on - strand at 1127.792 kb on + strand at 1127.833 kb on - strand, within ibpA at 1127.854 kb on + strand, within ibpA at 1127.854 kb on + strand, within ibpA at 1127.854 kb on + strand, within ibpA at 1127.873 kb on + strand, within ibpA at 1127.873 kb on + strand, within ibpA at 1127.874 kb on - strand, within ibpA at 1127.875 kb on + strand, within ibpA at 1127.875 kb on + strand, within ibpA at 1127.876 kb on - strand, within ibpA at 1127.966 kb on - strand, within ibpA at 1128.017 kb on + strand, within ibpA at 1128.017 kb on + strand, within ibpA at 1128.017 kb on + strand, within ibpA at 1128.017 kb on + strand, within ibpA at 1128.017 kb on + strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.018 kb on - strand, within ibpA at 1128.024 kb on - strand, within ibpA at 1128.066 kb on + strand, within ibpA at 1128.094 kb on + strand, within ibpA at 1128.094 kb on + strand, within ibpA at 1128.095 kb on - strand, within ibpA at 1128.099 kb on + strand, within ibpA at 1128.103 kb on - strand, within ibpA at 1128.103 kb on - strand, within ibpA at 1128.103 kb on - strand, within ibpA at 1128.116 kb on + strand, within ibpA at 1128.116 kb on + strand, within ibpA at 1128.116 kb on + strand, within ibpA at 1128.117 kb on - strand, within ibpA at 1128.117 kb on - strand, within ibpA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,124,948 + cbrA MCAODC_05565 0.19 -0.9 1,124,948 + cbrA MCAODC_05565 0.19 +0.5 1,124,949 - cbrA MCAODC_05565 0.19 -1.0 1,124,949 - cbrA MCAODC_05565 0.19 -0.9 1,124,949 - cbrA MCAODC_05565 0.19 -0.5 1,124,949 - cbrA MCAODC_05565 0.19 +0.8 1,124,954 - cbrA MCAODC_05565 0.20 -0.3 1,125,052 + cbrA MCAODC_05565 0.29 -1.3 1,125,052 + cbrA MCAODC_05565 0.29 +1.5 1,125,053 - cbrA MCAODC_05565 0.29 +0.1 1,125,053 - cbrA MCAODC_05565 0.29 -0.7 1,125,053 - cbrA MCAODC_05565 0.29 -1.2 1,125,175 - cbrA MCAODC_05565 0.40 +0.5 1,125,206 + cbrA MCAODC_05565 0.43 -0.6 1,125,290 + cbrA MCAODC_05565 0.51 +1.5 1,125,290 + cbrA MCAODC_05565 0.51 +1.2 1,125,291 - cbrA MCAODC_05565 0.51 -1.2 1,125,291 - cbrA MCAODC_05565 0.51 -0.0 1,125,291 - cbrA MCAODC_05565 0.51 -0.9 1,125,291 - cbrA MCAODC_05565 0.51 -0.3 1,125,291 - cbrA MCAODC_05565 0.51 -0.3 1,125,291 - cbrA MCAODC_05565 0.51 -0.9 1,125,294 + cbrA MCAODC_05565 0.51 +0.1 1,125,295 - cbrA MCAODC_05565 0.52 +0.9 1,125,314 + cbrA MCAODC_05565 0.53 +1.1 1,125,321 - cbrA MCAODC_05565 0.54 +0.5 1,125,363 - cbrA MCAODC_05565 0.58 -1.1 1,125,372 + cbrA MCAODC_05565 0.59 +0.4 1,125,375 + cbrA MCAODC_05565 0.59 -1.2 1,125,375 + cbrA MCAODC_05565 0.59 -0.7 1,125,375 + cbrA MCAODC_05565 0.59 +0.9 1,125,375 + cbrA MCAODC_05565 0.59 +0.1 1,125,417 + cbrA MCAODC_05565 0.63 +0.5 1,125,418 - cbrA MCAODC_05565 0.63 +0.7 1,125,418 - cbrA MCAODC_05565 0.63 -0.9 1,125,418 - cbrA MCAODC_05565 0.63 +0.6 1,125,418 - cbrA MCAODC_05565 0.63 +0.5 1,125,418 - cbrA MCAODC_05565 0.63 -0.2 1,125,418 - cbrA MCAODC_05565 0.63 +0.1 1,125,458 + cbrA MCAODC_05565 0.67 +0.3 1,125,516 + cbrA MCAODC_05565 0.72 -0.6 1,125,516 + cbrA MCAODC_05565 0.72 +0.4 1,125,517 - cbrA MCAODC_05565 0.72 +0.1 1,125,519 + cbrA MCAODC_05565 0.73 -0.5 1,125,519 + cbrA MCAODC_05565 0.73 -0.8 1,125,525 + cbrA MCAODC_05565 0.73 -0.3 1,125,525 + cbrA MCAODC_05565 0.73 +0.7 1,125,527 + cbrA MCAODC_05565 0.73 +1.3 1,125,528 - cbrA MCAODC_05565 0.73 -2.1 1,125,528 - cbrA MCAODC_05565 0.73 -0.1 1,125,528 - cbrA MCAODC_05565 0.73 -0.3 1,125,528 - cbrA MCAODC_05565 0.73 +0.1 1,125,528 - cbrA MCAODC_05565 0.73 -1.0 1,125,539 + cbrA MCAODC_05565 0.74 -0.4 1,125,539 + cbrA MCAODC_05565 0.74 -0.1 1,125,540 - cbrA MCAODC_05565 0.75 +0.2 1,125,540 - cbrA MCAODC_05565 0.75 -0.1 1,125,540 - cbrA MCAODC_05565 0.75 -0.7 1,125,540 - cbrA MCAODC_05565 0.75 -0.4 1,125,544 - cbrA MCAODC_05565 0.75 -2.0 1,125,636 + cbrA MCAODC_05565 0.84 +1.0 1,125,745 + +0.1 1,125,745 + -3.1 1,125,845 + -0.0 1,125,846 - -0.9 1,125,846 - +0.6 1,125,846 - -0.7 1,125,846 - -1.3 1,125,874 + -0.3 1,125,874 + -0.9 1,125,874 + +0.2 1,125,874 + +1.1 1,125,874 + +0.1 1,125,875 - +0.0 1,125,875 - +0.2 1,125,875 - +0.0 1,125,897 - -0.1 1,125,921 + +0.1 1,125,955 + -0.5 1,125,955 + +0.1 1,125,955 + -0.5 1,125,956 - +0.6 1,125,961 + -0.9 1,125,990 + +0.1 1,125,991 - -0.7 1,125,991 - -0.1 1,126,072 + yidR MCAODC_05570 0.13 -1.3 1,126,073 - yidR MCAODC_05570 0.13 +0.4 1,126,073 - yidR MCAODC_05570 0.13 +0.9 1,126,136 + yidR MCAODC_05570 0.19 +0.9 1,126,137 - yidR MCAODC_05570 0.19 +1.5 1,126,137 - yidR MCAODC_05570 0.19 +0.1 1,126,182 - yidR MCAODC_05570 0.22 -1.2 1,126,334 - yidR MCAODC_05570 0.35 +0.3 1,126,337 + yidR MCAODC_05570 0.35 -0.8 1,126,337 + yidR MCAODC_05570 0.35 +0.1 1,126,337 + yidR MCAODC_05570 0.35 -1.8 1,126,337 + yidR MCAODC_05570 0.35 -0.5 1,126,337 + yidR MCAODC_05570 0.35 -1.2 1,126,338 - yidR MCAODC_05570 0.35 +0.8 1,126,350 + yidR MCAODC_05570 0.36 +1.9 1,126,350 + yidR MCAODC_05570 0.36 -0.5 1,126,350 + yidR MCAODC_05570 0.36 +0.6 1,126,350 + yidR MCAODC_05570 0.36 -0.7 1,126,350 + yidR MCAODC_05570 0.36 +0.1 1,126,350 + yidR MCAODC_05570 0.36 +0.8 1,126,350 + yidR MCAODC_05570 0.36 -0.8 1,126,350 + yidR MCAODC_05570 0.36 -0.4 1,126,350 + yidR MCAODC_05570 0.36 -0.2 1,126,350 + yidR MCAODC_05570 0.36 -0.6 1,126,350 + yidR MCAODC_05570 0.36 -0.5 1,126,350 + yidR MCAODC_05570 0.36 +0.7 1,126,351 - yidR MCAODC_05570 0.36 -0.6 1,126,351 - yidR MCAODC_05570 0.36 -1.0 1,126,351 - yidR MCAODC_05570 0.36 -0.4 1,126,351 - yidR MCAODC_05570 0.36 -0.1 1,126,351 - yidR MCAODC_05570 0.36 +0.6 1,126,445 + yidR MCAODC_05570 0.44 -1.5 1,126,446 - yidR MCAODC_05570 0.44 -0.9 1,126,446 - yidR MCAODC_05570 0.44 -0.4 1,126,543 - yidR MCAODC_05570 0.52 +0.1 1,126,565 - yidR MCAODC_05570 0.54 -0.4 1,126,623 + yidR MCAODC_05570 0.59 -0.2 1,126,669 - yidR MCAODC_05570 0.62 -0.7 1,126,789 + yidR MCAODC_05570 0.72 -0.1 1,126,818 + yidR MCAODC_05570 0.75 +0.6 1,126,855 + yidR MCAODC_05570 0.78 +0.6 1,126,855 + yidR MCAODC_05570 0.78 -0.8 1,126,921 + yidR MCAODC_05570 0.83 -0.1 1,126,922 - yidR MCAODC_05570 0.83 -0.3 1,126,922 - yidR MCAODC_05570 0.83 -0.3 1,127,006 + +0.5 1,127,006 + -1.0 1,127,006 + -0.3 1,127,006 + +0.2 1,127,006 + -2.6 1,127,133 - +0.0 1,127,133 - -0.3 1,127,242 - yidQ MCAODC_05575 0.44 -0.0 1,127,297 + yidQ MCAODC_05575 0.65 -0.6 1,127,357 - yidQ MCAODC_05575 0.88 +0.7 1,127,427 + -1.6 1,127,427 + -0.5 1,127,428 - -0.5 1,127,428 - -0.6 1,127,439 + -2.5 1,127,440 - -0.3 1,127,454 + -1.6 1,127,454 + -0.5 1,127,455 - -0.9 1,127,460 - -1.8 1,127,460 - -1.1 1,127,462 + -3.5 1,127,463 - -0.9 1,127,501 + +0.1 1,127,501 + -1.0 1,127,502 - -0.1 1,127,502 - +0.5 1,127,502 - +0.7 1,127,502 - +2.0 1,127,502 - -0.9 1,127,502 - -0.1 1,127,523 + -0.9 1,127,523 + -0.2 1,127,523 + +1.1 1,127,524 - +0.9 1,127,524 - -0.2 1,127,535 + -0.1 1,127,535 + +1.5 1,127,536 - +3.1 1,127,564 + -0.4 1,127,590 + -0.3 1,127,590 + +0.8 1,127,590 + -0.7 1,127,591 - +0.1 1,127,597 + -2.9 1,127,598 - -0.7 1,127,598 - -0.0 1,127,598 - -0.7 1,127,604 + -0.3 1,127,604 + +0.7 1,127,605 - -0.4 1,127,630 - +0.8 1,127,671 - -0.1 1,127,705 + +1.2 1,127,733 + -0.5 1,127,733 + -1.6 1,127,734 - +1.5 1,127,757 + -0.2 1,127,757 + +0.0 1,127,757 + -0.1 1,127,757 + -0.4 1,127,758 - +1.0 1,127,758 - +0.7 1,127,758 - -0.5 1,127,758 - -0.3 1,127,792 + +0.4 1,127,833 - ibpA MCAODC_05580 0.16 -0.9 1,127,854 + ibpA MCAODC_05580 0.21 -1.0 1,127,854 + ibpA MCAODC_05580 0.21 -0.3 1,127,854 + ibpA MCAODC_05580 0.21 -0.3 1,127,873 + ibpA MCAODC_05580 0.26 -0.0 1,127,873 + ibpA MCAODC_05580 0.26 +0.5 1,127,874 - ibpA MCAODC_05580 0.26 +1.5 1,127,875 + ibpA MCAODC_05580 0.27 +0.1 1,127,875 + ibpA MCAODC_05580 0.27 -1.9 1,127,876 - ibpA MCAODC_05580 0.27 -0.1 1,127,966 - ibpA MCAODC_05580 0.49 -2.5 1,128,017 + ibpA MCAODC_05580 0.61 +1.5 1,128,017 + ibpA MCAODC_05580 0.61 -0.5 1,128,017 + ibpA MCAODC_05580 0.61 -0.5 1,128,017 + ibpA MCAODC_05580 0.61 +0.6 1,128,017 + ibpA MCAODC_05580 0.61 -0.4 1,128,018 - ibpA MCAODC_05580 0.61 -0.6 1,128,018 - ibpA MCAODC_05580 0.61 +0.2 1,128,018 - ibpA MCAODC_05580 0.61 +1.5 1,128,018 - ibpA MCAODC_05580 0.61 -0.8 1,128,018 - ibpA MCAODC_05580 0.61 -2.1 1,128,018 - ibpA MCAODC_05580 0.61 -0.9 1,128,018 - ibpA MCAODC_05580 0.61 -0.1 1,128,018 - ibpA MCAODC_05580 0.61 +0.1 1,128,018 - ibpA MCAODC_05580 0.61 +1.7 1,128,018 - ibpA MCAODC_05580 0.61 +0.2 1,128,024 - ibpA MCAODC_05580 0.63 +1.7 1,128,066 + ibpA MCAODC_05580 0.73 -0.4 1,128,094 + ibpA MCAODC_05580 0.79 -0.0 1,128,094 + ibpA MCAODC_05580 0.79 -1.4 1,128,095 - ibpA MCAODC_05580 0.80 -0.6 1,128,099 + ibpA MCAODC_05580 0.81 -0.2 1,128,103 - ibpA MCAODC_05580 0.82 +0.2 1,128,103 - ibpA MCAODC_05580 0.82 -0.1 1,128,103 - ibpA MCAODC_05580 0.82 +2.1 1,128,116 + ibpA MCAODC_05580 0.85 -1.3 1,128,116 + ibpA MCAODC_05580 0.85 +1.1 1,128,116 + ibpA MCAODC_05580 0.85 +0.9 1,128,117 - ibpA MCAODC_05580 0.85 -1.9 1,128,117 - ibpA MCAODC_05580 0.85 -0.6
Or see this region's nucleotide sequence