Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjiH and iadA overlap by 4 nucleotides iadA and iadA are separated by 12 nucleotides iadA and hypT are separated by 247 nucleotides hypT and iraD overlap by 8 nucleotides
MCAODC_02030: yjiH - Uncharacterized protein YjiH, at 400,115 to 400,798
yjiH
MCAODC_02035: iadA - beta-aspartyl-peptidase, at 400,795 to 401,256
iadA
MCAODC_02040: iadA - beta-aspartyl-peptidase, at 401,269 to 402,441
iadA
MCAODC_02045: hypT - hypochlorite stress DNA-binding transcriptional regulator HypT, at 402,689 to 403,417
hypT
MCAODC_02050: iraD - anti-adapter protein IraD, at 403,410 to 403,802
iraD
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.403 kb on - strand, within yjiH at 400.403 kb on - strand, within yjiH at 400.432 kb on - strand, within yjiH at 400.450 kb on - strand, within yjiH at 400.450 kb on - strand, within yjiH at 400.450 kb on - strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.640 kb on + strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.641 kb on - strand, within yjiH at 400.693 kb on - strand, within yjiH at 400.698 kb on + strand, within yjiH at 400.754 kb on - strand at 400.827 kb on + strand at 400.827 kb on + strand at 400.827 kb on + strand at 400.828 kb on - strand at 400.857 kb on + strand, within iadA at 400.858 kb on - strand, within iadA at 400.953 kb on + strand, within iadA at 400.954 kb on - strand, within iadA at 400.954 kb on - strand, within iadA at 400.954 kb on - strand, within iadA at 400.954 kb on - strand, within iadA at 401.012 kb on + strand, within iadA at 401.028 kb on + strand, within iadA at 401.029 kb on - strand, within iadA at 401.078 kb on + strand, within iadA at 401.116 kb on + strand, within iadA at 401.116 kb on + strand, within iadA at 401.120 kb on + strand, within iadA at 401.121 kb on - strand, within iadA at 401.121 kb on - strand, within iadA at 401.320 kb on + strand at 401.321 kb on - strand at 401.388 kb on + strand, within iadA at 401.389 kb on - strand, within iadA at 401.389 kb on - strand, within iadA at 401.409 kb on - strand, within iadA at 401.409 kb on - strand, within iadA at 401.461 kb on - strand, within iadA at 401.535 kb on - strand, within iadA at 401.593 kb on - strand, within iadA at 401.593 kb on - strand, within iadA at 401.678 kb on - strand, within iadA at 401.678 kb on - strand, within iadA at 401.794 kb on + strand, within iadA at 401.795 kb on - strand, within iadA at 401.795 kb on - strand, within iadA at 401.884 kb on - strand, within iadA at 401.884 kb on - strand, within iadA at 401.894 kb on + strand, within iadA at 401.894 kb on + strand, within iadA at 401.894 kb on + strand, within iadA at 401.902 kb on - strand, within iadA at 401.902 kb on - strand, within iadA at 401.902 kb on - strand, within iadA at 401.902 kb on - strand, within iadA at 401.902 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.906 kb on - strand, within iadA at 401.972 kb on + strand, within iadA at 401.972 kb on + strand, within iadA at 401.973 kb on - strand, within iadA at 401.973 kb on - strand, within iadA at 401.973 kb on - strand, within iadA at 401.973 kb on - strand, within iadA at 402.229 kb on + strand, within iadA at 402.336 kb on - strand at 402.336 kb on - strand at 402.371 kb on + strand at 402.373 kb on + strand at 402.373 kb on + strand at 402.373 kb on + strand at 402.373 kb on + strand at 402.373 kb on + strand at 402.374 kb on - strand at 402.374 kb on - strand at 402.440 kb on - strand at 402.460 kb on - strand at 402.497 kb on + strand at 402.504 kb on + strand at 402.504 kb on + strand at 402.505 kb on - strand at 402.532 kb on + strand at 402.760 kb on - strand at 402.760 kb on - strand at 402.760 kb on - strand at 402.808 kb on + strand, within hypT at 402.808 kb on + strand, within hypT at 402.809 kb on - strand, within hypT at 402.886 kb on + strand, within hypT at 402.886 kb on + strand, within hypT at 403.012 kb on - strand, within hypT at 403.012 kb on - strand, within hypT at 403.104 kb on - strand, within hypT at 403.119 kb on - strand, within hypT at 403.136 kb on - strand, within hypT at 403.136 kb on - strand, within hypT at 403.207 kb on - strand, within hypT at 403.253 kb on + strand, within hypT at 403.253 kb on + strand, within hypT at 403.254 kb on - strand, within hypT at 403.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 400,403 - yjiH MCAODC_02030 0.42 -0.6 400,403 - yjiH MCAODC_02030 0.42 +0.2 400,432 - yjiH MCAODC_02030 0.46 +0.3 400,450 - yjiH MCAODC_02030 0.49 -1.1 400,450 - yjiH MCAODC_02030 0.49 +0.3 400,450 - yjiH MCAODC_02030 0.49 -0.6 400,640 + yjiH MCAODC_02030 0.77 -0.4 400,640 + yjiH MCAODC_02030 0.77 +0.4 400,640 + yjiH MCAODC_02030 0.77 +1.6 400,640 + yjiH MCAODC_02030 0.77 -0.1 400,640 + yjiH MCAODC_02030 0.77 -0.7 400,641 - yjiH MCAODC_02030 0.77 +0.7 400,641 - yjiH MCAODC_02030 0.77 -1.6 400,641 - yjiH MCAODC_02030 0.77 -0.1 400,641 - yjiH MCAODC_02030 0.77 -0.2 400,641 - yjiH MCAODC_02030 0.77 -0.3 400,693 - yjiH MCAODC_02030 0.85 -0.4 400,698 + yjiH MCAODC_02030 0.85 -1.0 400,754 - +0.8 400,827 + +0.3 400,827 + -1.2 400,827 + +0.1 400,828 - +0.0 400,857 + iadA MCAODC_02035 0.13 -2.4 400,858 - iadA MCAODC_02035 0.14 -1.0 400,953 + iadA MCAODC_02035 0.34 -1.0 400,954 - iadA MCAODC_02035 0.34 +0.1 400,954 - iadA MCAODC_02035 0.34 -1.0 400,954 - iadA MCAODC_02035 0.34 +0.0 400,954 - iadA MCAODC_02035 0.34 +0.0 401,012 + iadA MCAODC_02035 0.47 +1.6 401,028 + iadA MCAODC_02035 0.50 -1.2 401,029 - iadA MCAODC_02035 0.51 +0.6 401,078 + iadA MCAODC_02035 0.61 -0.2 401,116 + iadA MCAODC_02035 0.69 -0.3 401,116 + iadA MCAODC_02035 0.69 +0.7 401,120 + iadA MCAODC_02035 0.70 -0.7 401,121 - iadA MCAODC_02035 0.71 -0.4 401,121 - iadA MCAODC_02035 0.71 +0.8 401,320 + +0.5 401,321 - -0.7 401,388 + iadA MCAODC_02040 0.10 -1.7 401,389 - iadA MCAODC_02040 0.10 -0.0 401,389 - iadA MCAODC_02040 0.10 -0.6 401,409 - iadA MCAODC_02040 0.12 -0.6 401,409 - iadA MCAODC_02040 0.12 -1.3 401,461 - iadA MCAODC_02040 0.16 -0.5 401,535 - iadA MCAODC_02040 0.23 -0.4 401,593 - iadA MCAODC_02040 0.28 +0.2 401,593 - iadA MCAODC_02040 0.28 -0.1 401,678 - iadA MCAODC_02040 0.35 -0.7 401,678 - iadA MCAODC_02040 0.35 +1.6 401,794 + iadA MCAODC_02040 0.45 +0.6 401,795 - iadA MCAODC_02040 0.45 +0.1 401,795 - iadA MCAODC_02040 0.45 -0.3 401,884 - iadA MCAODC_02040 0.52 +0.0 401,884 - iadA MCAODC_02040 0.52 +0.5 401,894 + iadA MCAODC_02040 0.53 -0.4 401,894 + iadA MCAODC_02040 0.53 +0.9 401,894 + iadA MCAODC_02040 0.53 -0.9 401,902 - iadA MCAODC_02040 0.54 +0.1 401,902 - iadA MCAODC_02040 0.54 -0.6 401,902 - iadA MCAODC_02040 0.54 +0.3 401,902 - iadA MCAODC_02040 0.54 -0.4 401,902 - iadA MCAODC_02040 0.54 -0.3 401,906 - iadA MCAODC_02040 0.54 -0.5 401,906 - iadA MCAODC_02040 0.54 +1.5 401,906 - iadA MCAODC_02040 0.54 +0.7 401,906 - iadA MCAODC_02040 0.54 -0.7 401,906 - iadA MCAODC_02040 0.54 +0.2 401,972 + iadA MCAODC_02040 0.60 +0.6 401,972 + iadA MCAODC_02040 0.60 -0.5 401,973 - iadA MCAODC_02040 0.60 -0.1 401,973 - iadA MCAODC_02040 0.60 -1.2 401,973 - iadA MCAODC_02040 0.60 -2.5 401,973 - iadA MCAODC_02040 0.60 +1.8 402,229 + iadA MCAODC_02040 0.82 +0.0 402,336 - +0.7 402,336 - -0.4 402,371 + -0.1 402,373 + +0.2 402,373 + -0.1 402,373 + +0.7 402,373 + +0.3 402,373 + +1.6 402,374 - -0.9 402,374 - +0.3 402,440 - +0.5 402,460 - -1.3 402,497 + -0.0 402,504 + -0.5 402,504 + -1.8 402,505 - +0.2 402,532 + +1.4 402,760 - +1.9 402,760 - +1.4 402,760 - -1.3 402,808 + hypT MCAODC_02045 0.16 -0.3 402,808 + hypT MCAODC_02045 0.16 +2.2 402,809 - hypT MCAODC_02045 0.16 -0.6 402,886 + hypT MCAODC_02045 0.27 +0.0 402,886 + hypT MCAODC_02045 0.27 -0.2 403,012 - hypT MCAODC_02045 0.44 -1.6 403,012 - hypT MCAODC_02045 0.44 -0.3 403,104 - hypT MCAODC_02045 0.57 -0.6 403,119 - hypT MCAODC_02045 0.59 +0.1 403,136 - hypT MCAODC_02045 0.61 -0.4 403,136 - hypT MCAODC_02045 0.61 +1.0 403,207 - hypT MCAODC_02045 0.71 -1.7 403,253 + hypT MCAODC_02045 0.77 -0.6 403,253 + hypT MCAODC_02045 0.77 +1.6 403,254 - hypT MCAODC_02045 0.78 +0.0 403,412 - -1.1
Or see this region's nucleotide sequence