Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yadG and can are separated by 108 nucleotides can and hpt are separated by 40 nucleotides hpt and gcd are separated by 205 nucleotides
MCAODC_00950: yadG - Uncharacterized ABC transporter ATP-binding protein YadG, at 169,133 to 170,059
yadG
MCAODC_00955: can - carbonate dehydratase, at 170,168 to 170,830
can
MCAODC_00960: hpt - hypoxanthine phosphoribosyltransferase, at 170,871 to 171,407
hpt
MCAODC_00965: gcd - quinoprotein glucose dehydrogenase, at 171,613 to 174,003
gcd
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 169.891 kb on + strand, within yadG at 169.896 kb on - strand, within yadG at 169.909 kb on + strand, within yadG at 169.909 kb on + strand, within yadG at 169.909 kb on + strand, within yadG at 169.910 kb on - strand, within yadG at 169.918 kb on + strand, within yadG at 170.020 kb on - strand at 170.030 kb on - strand at 170.071 kb on + strand at 170.072 kb on - strand at 170.072 kb on - strand at 170.072 kb on - strand at 170.072 kb on - strand at 170.077 kb on - strand at 170.077 kb on - strand at 170.085 kb on - strand at 170.091 kb on + strand at 170.829 kb on - strand at 170.872 kb on + strand at 170.873 kb on - strand at 170.873 kb on - strand at 170.902 kb on + strand at 170.902 kb on + strand at 171.029 kb on + strand, within hpt at 171.063 kb on + strand, within hpt at 171.064 kb on - strand, within hpt at 171.064 kb on - strand, within hpt at 171.089 kb on + strand, within hpt at 171.090 kb on - strand, within hpt at 171.090 kb on - strand, within hpt at 171.090 kb on - strand, within hpt at 171.107 kb on + strand, within hpt at 171.140 kb on + strand, within hpt at 171.199 kb on + strand, within hpt at 171.199 kb on + strand, within hpt at 171.215 kb on + strand, within hpt at 171.215 kb on + strand, within hpt at 171.234 kb on + strand, within hpt at 171.269 kb on + strand, within hpt at 171.269 kb on + strand, within hpt at 171.269 kb on + strand, within hpt at 171.270 kb on - strand, within hpt at 171.270 kb on - strand, within hpt at 171.270 kb on - strand, within hpt at 171.323 kb on - strand, within hpt at 171.323 kb on - strand, within hpt at 171.387 kb on + strand at 171.387 kb on + strand at 171.388 kb on - strand at 171.388 kb on - strand at 171.394 kb on - strand at 171.398 kb on + strand at 171.399 kb on - strand at 171.419 kb on + strand at 171.487 kb on + strand at 171.487 kb on + strand at 171.489 kb on + strand at 171.489 kb on + strand at 171.524 kb on + strand at 171.525 kb on - strand at 171.570 kb on + strand at 171.570 kb on + strand at 171.581 kb on - strand at 171.622 kb on - strand at 171.622 kb on - strand at 171.622 kb on - strand at 171.657 kb on - strand at 171.688 kb on + strand at 171.688 kb on + strand at 171.688 kb on + strand at 171.689 kb on - strand at 171.689 kb on - strand at 171.689 kb on - strand at 171.692 kb on + strand at 171.692 kb on + strand at 171.693 kb on - strand at 171.737 kb on - strand at 171.744 kb on + strand at 171.812 kb on + strand at 172.009 kb on - strand, within gcd at 172.011 kb on + strand, within gcd at 172.012 kb on - strand, within gcd at 172.061 kb on + strand, within gcd at 172.089 kb on + strand, within gcd at 172.090 kb on - strand, within gcd at 172.170 kb on + strand, within gcd at 172.189 kb on - strand, within gcd at 172.295 kb on - strand, within gcd at 172.295 kb on - strand, within gcd at 172.381 kb on - strand, within gcd at 172.401 kb on - strand, within gcd at 172.401 kb on - strand, within gcd
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 169,891 + yadG MCAODC_00950 0.82 +1.4 169,896 - yadG MCAODC_00950 0.82 -1.2 169,909 + yadG MCAODC_00950 0.84 -0.8 169,909 + yadG MCAODC_00950 0.84 +1.6 169,909 + yadG MCAODC_00950 0.84 -1.3 169,910 - yadG MCAODC_00950 0.84 -0.6 169,918 + yadG MCAODC_00950 0.85 -0.1 170,020 - +0.8 170,030 - -1.6 170,071 + +2.6 170,072 - -0.5 170,072 - +0.6 170,072 - -0.9 170,072 - -0.0 170,077 - +0.3 170,077 - -1.4 170,085 - -0.7 170,091 + -0.0 170,829 - -1.4 170,872 + -0.4 170,873 - +2.0 170,873 - +1.3 170,902 + +0.2 170,902 + -0.3 171,029 + hpt MCAODC_00960 0.29 -0.7 171,063 + hpt MCAODC_00960 0.36 +0.8 171,064 - hpt MCAODC_00960 0.36 +0.2 171,064 - hpt MCAODC_00960 0.36 -0.4 171,089 + hpt MCAODC_00960 0.41 -2.0 171,090 - hpt MCAODC_00960 0.41 +2.2 171,090 - hpt MCAODC_00960 0.41 +0.0 171,090 - hpt MCAODC_00960 0.41 -0.1 171,107 + hpt MCAODC_00960 0.44 -1.0 171,140 + hpt MCAODC_00960 0.50 -0.6 171,199 + hpt MCAODC_00960 0.61 -2.5 171,199 + hpt MCAODC_00960 0.61 -0.1 171,215 + hpt MCAODC_00960 0.64 +0.6 171,215 + hpt MCAODC_00960 0.64 +0.6 171,234 + hpt MCAODC_00960 0.68 +3.2 171,269 + hpt MCAODC_00960 0.74 +0.7 171,269 + hpt MCAODC_00960 0.74 -0.2 171,269 + hpt MCAODC_00960 0.74 -0.1 171,270 - hpt MCAODC_00960 0.74 +1.5 171,270 - hpt MCAODC_00960 0.74 +2.6 171,270 - hpt MCAODC_00960 0.74 -1.1 171,323 - hpt MCAODC_00960 0.84 -0.1 171,323 - hpt MCAODC_00960 0.84 -1.2 171,387 + +0.8 171,387 + -0.6 171,388 - +0.7 171,388 - -1.0 171,394 - -0.2 171,398 + -1.9 171,399 - +0.3 171,419 + -0.6 171,487 + -1.7 171,487 + +0.2 171,489 + +1.8 171,489 + -0.4 171,524 + -1.3 171,525 - +0.6 171,570 + -0.9 171,570 + -1.2 171,581 - -1.0 171,622 - +0.7 171,622 - -0.2 171,622 - -0.4 171,657 - -0.2 171,688 + -1.0 171,688 + +0.2 171,688 + +0.2 171,689 - +1.0 171,689 - +0.8 171,689 - -0.9 171,692 + -0.5 171,692 + -0.7 171,693 - -1.3 171,737 - -1.6 171,744 + +0.6 171,812 + -0.6 172,009 - gcd MCAODC_00965 0.17 +1.2 172,011 + gcd MCAODC_00965 0.17 -0.3 172,012 - gcd MCAODC_00965 0.17 -2.6 172,061 + gcd MCAODC_00965 0.19 -1.5 172,089 + gcd MCAODC_00965 0.20 -1.4 172,090 - gcd MCAODC_00965 0.20 -1.1 172,170 + gcd MCAODC_00965 0.23 +1.6 172,189 - gcd MCAODC_00965 0.24 +0.4 172,295 - gcd MCAODC_00965 0.29 +1.0 172,295 - gcd MCAODC_00965 0.29 -0.7 172,381 - gcd MCAODC_00965 0.32 -0.2 172,401 - gcd MCAODC_00965 0.33 -0.0 172,401 - gcd MCAODC_00965 0.33 -0.2
Or see this region's nucleotide sequence