Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF817

Experiment: Ying_all64 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF816 and GFF817 are separated by 20 nucleotidesGFF817 and GFF818 are separated by 36 nucleotidesGFF818 and GFF819 are separated by 259 nucleotides GFF816 - FIG015287: Zinc protease, at 510,930 to 512,267 GFF816 GFF817 - Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-), at 512,288 to 512,902 GFF817 GFF818 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 512,939 to 513,457 GFF818 GFF819 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 513,717 to 514,379 GFF819 Position (kb) 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1at 511.473 kb on + strand, within GFF816at 511.473 kb on + strand, within GFF816at 511.488 kb on + strand, within GFF816at 511.488 kb on + strand, within GFF816at 511.488 kb on + strand, within GFF816at 511.489 kb on - strand, within GFF816at 511.489 kb on - strand, within GFF816at 511.489 kb on - strand, within GFF816at 511.495 kb on - strand, within GFF816at 511.552 kb on - strand, within GFF816at 511.552 kb on - strand, within GFF816at 511.806 kb on + strand, within GFF816at 511.806 kb on + strand, within GFF816at 511.806 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.887 kb on + strand, within GFF816at 511.887 kb on + strand, within GFF816at 511.888 kb on - strand, within GFF816at 511.888 kb on - strand, within GFF816at 511.902 kb on + strand, within GFF816at 511.903 kb on - strand, within GFF816at 512.056 kb on - strand, within GFF816at 512.148 kb on + strandat 512.275 kb on + strandat 512.275 kb on + strandat 512.276 kb on - strandat 512.276 kb on - strandat 512.682 kb on + strand, within GFF817at 512.683 kb on - strand, within GFF817at 512.683 kb on - strand, within GFF817at 512.726 kb on + strand, within GFF817at 512.726 kb on + strand, within GFF817at 512.726 kb on + strand, within GFF817at 512.727 kb on - strand, within GFF817at 512.780 kb on + strand, within GFF817at 512.781 kb on - strand, within GFF817at 512.928 kb on + strandat 512.928 kb on + strandat 512.928 kb on + strandat 512.933 kb on + strandat 513.455 kb on + strandat 513.455 kb on + strandat 513.455 kb on + strandat 513.455 kb on + strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.559 kb on + strandat 513.695 kb on - strandat 513.695 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
remove
511,473 + GFF816 0.41 -1.0
511,473 + GFF816 0.41 -0.2
511,488 + GFF816 0.42 -0.1
511,488 + GFF816 0.42 +0.8
511,488 + GFF816 0.42 -0.8
511,489 - GFF816 0.42 +0.8
511,489 - GFF816 0.42 -0.1
511,489 - GFF816 0.42 -0.0
511,495 - GFF816 0.42 +0.6
511,552 - GFF816 0.46 -0.3
511,552 - GFF816 0.46 -1.4
511,806 + GFF816 0.65 -0.3
511,806 + GFF816 0.65 -0.3
511,806 + GFF816 0.65 -0.0
511,818 + GFF816 0.66 -0.4
511,818 + GFF816 0.66 -3.0
511,818 + GFF816 0.66 +0.5
511,818 + GFF816 0.66 +0.8
511,818 + GFF816 0.66 -0.9
511,818 + GFF816 0.66 +0.2
511,818 + GFF816 0.66 -1.3
511,819 - GFF816 0.66 -0.2
511,819 - GFF816 0.66 +0.1
511,819 - GFF816 0.66 -0.2
511,819 - GFF816 0.66 -0.7
511,819 - GFF816 0.66 +0.4
511,819 - GFF816 0.66 -0.4
511,887 + GFF816 0.72 -0.7
511,887 + GFF816 0.72 +0.2
511,888 - GFF816 0.72 +0.3
511,888 - GFF816 0.72 +0.2
511,902 + GFF816 0.73 +0.6
511,903 - GFF816 0.73 +0.8
512,056 - GFF816 0.84 -1.2
512,148 + -0.4
512,275 + -0.5
512,275 + +0.7
512,276 - -1.8
512,276 - -0.6
512,682 + GFF817 0.64 -0.2
512,683 - GFF817 0.64 -0.5
512,683 - GFF817 0.64 +0.2
512,726 + GFF817 0.71 -2.0
512,726 + GFF817 0.71 -0.7
512,726 + GFF817 0.71 +0.1
512,727 - GFF817 0.71 -0.2
512,780 + GFF817 0.80 -0.7
512,781 - GFF817 0.80 -0.2
512,928 + -0.6
512,928 + +0.0
512,928 + -0.4
512,933 + -1.1
513,455 + +0.1
513,455 + +0.0
513,455 + -0.6
513,455 + +0.2
513,456 - +0.1
513,456 - -0.6
513,456 - -0.4
513,456 - +0.0
513,456 - -0.1
513,456 - -0.1
513,456 - -0.2
513,456 - +0.1
513,456 - -0.7
513,456 - -0.8
513,559 + -1.8
513,695 - -2.1
513,695 - +0.0

Or see this region's nucleotide sequence