Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF743 and GFF744 are separated by 77 nucleotides GFF744 and GFF745 overlap by 4 nucleotides GFF745 and GFF746 are separated by 394 nucleotides
GFF743 - Protein of unknown function DUF306, at 429,768 to 430,193
GFF743
GFF744 - Putative deoxyribonuclease YjjV, at 430,271 to 431,104
GFF744
GFF745 - G:T/U mismatch-specific uracil/thymine DNA-glycosylase, at 431,101 to 431,598
GFF745
GFF746 - Spermidine synthase (EC 2.5.1.16), at 431,993 to 432,775
GFF746
Position (kb) 431
432 Strain fitness (log2 ratio) -2
-1
0
1
2 at 430.264 kb on + strand at 430.264 kb on + strand at 430.265 kb on - strand at 430.448 kb on + strand, within GFF744 at 430.448 kb on + strand, within GFF744 at 430.631 kb on + strand, within GFF744 at 430.631 kb on + strand, within GFF744 at 430.928 kb on + strand, within GFF744 at 430.929 kb on - strand, within GFF744 at 431.200 kb on + strand, within GFF745 at 431.200 kb on + strand, within GFF745 at 431.201 kb on - strand, within GFF745 at 431.203 kb on + strand, within GFF745 at 431.204 kb on - strand, within GFF745 at 431.204 kb on - strand, within GFF745 at 431.275 kb on + strand, within GFF745 at 431.275 kb on + strand, within GFF745 at 431.276 kb on - strand, within GFF745 at 431.276 kb on - strand, within GFF745 at 431.331 kb on - strand, within GFF745 at 431.712 kb on + strand at 431.757 kb on - strand at 431.798 kb on + strand at 431.798 kb on + strand at 431.899 kb on + strand at 431.908 kb on + strand at 431.909 kb on - strand at 432.155 kb on + strand, within GFF746 at 432.155 kb on + strand, within GFF746 at 432.156 kb on - strand, within GFF746 at 432.156 kb on - strand, within GFF746 at 432.446 kb on + strand, within GFF746 at 432.564 kb on - strand, within GFF746
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 430,264 + -0.0 430,264 + +0.4 430,265 - +0.7 430,448 + GFF744 0.21 +0.4 430,448 + GFF744 0.21 +0.5 430,631 + GFF744 0.43 +0.4 430,631 + GFF744 0.43 +0.6 430,928 + GFF744 0.79 -0.0 430,929 - GFF744 0.79 -0.8 431,200 + GFF745 0.20 +0.0 431,200 + GFF745 0.20 -0.7 431,201 - GFF745 0.20 -0.7 431,203 + GFF745 0.20 -0.8 431,204 - GFF745 0.21 +1.8 431,204 - GFF745 0.21 -0.7 431,275 + GFF745 0.35 -0.0 431,275 + GFF745 0.35 -0.4 431,276 - GFF745 0.35 -0.1 431,276 - GFF745 0.35 +0.3 431,331 - GFF745 0.46 +0.1 431,712 + -0.1 431,757 - +0.1 431,798 + -0.4 431,798 + +0.8 431,899 + +1.0 431,908 + +0.1 431,909 - +0.1 432,155 + GFF746 0.21 -0.3 432,155 + GFF746 0.21 -2.6 432,156 - GFF746 0.21 +0.3 432,156 - GFF746 0.21 -0.1 432,446 + GFF746 0.58 +0.9 432,564 - GFF746 0.73 +0.3
Or see this region's nucleotide sequence