Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5539

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,543,995	+				+0.4
2,544,046	+				-0.6
2,544,046	+				-0.3
2,544,046	+				+0.1
2,544,047	-				-0.0
2,544,069	+				-0.4
2,544,069	+				+0.7
2,544,070	-				+0.2
2,544,070	-				-0.0
2,544,350	-				-0.1
2,544,506	-				-1.7
2,544,522	+				+0.4
2,544,706	+				+0.1
2,544,706	+				-0.3
2,544,707	-				-0.0
2,544,838	+				+0.8
2,544,838	+				+0.0
2,544,838	+				-0.0
2,544,839	-				-0.2
2,544,886	-		GFF5539	0.12	-0.1
2,545,059	+		GFF5539	0.30	-0.3
2,545,059	+		GFF5539	0.30	-0.4
2,545,060	-		GFF5539	0.31	+0.3
2,545,117	-		GFF5539	0.36	+0.1
2,545,117	-		GFF5539	0.36	-1.6
2,545,117	-		GFF5539	0.36	-0.6
2,545,117	-		GFF5539	0.36	+0.1
2,545,125	+		GFF5539	0.37	-0.3
2,545,125	+		GFF5539	0.37	-0.8
2,545,126	-		GFF5539	0.37	-0.1
2,545,126	-		GFF5539	0.37	-0.2
2,545,126	-		GFF5539	0.37	+0.8
2,545,240	-		GFF5539	0.49	+0.3
2,545,240	-		GFF5539	0.49	-0.1
2,545,467	+		GFF5539	0.73	-0.4
2,545,467	+		GFF5539	0.73	-0.2
2,545,467	+		GFF5539	0.73	+0.1
2,545,467	+		GFF5539	0.73	+0.8
2,545,467	+		GFF5539	0.73	-0.4
2,545,467	+		GFF5539	0.73	-1.6
2,545,467	+		GFF5539	0.73	+0.2
2,545,467	+		GFF5539	0.73	+0.0
2,545,467	+		GFF5539	0.73	+1.1
2,545,468	-		GFF5539	0.73	+0.1
2,545,468	-		GFF5539	0.73	-0.3
2,545,468	-		GFF5539	0.73	-1.3
2,545,539	+		GFF5539	0.80	-1.3
2,545,540	-		GFF5539	0.81	+0.3
2,545,557	+		GFF5539	0.82	-0.2
2,545,557	+		GFF5539	0.82	-0.5
2,545,557	+		GFF5539	0.82	-0.6
2,545,557	+		GFF5539	0.82	-0.1
2,545,557	+		GFF5539	0.82	-1.4
2,545,558	-		GFF5539	0.82	+0.2
2,545,558	-		GFF5539	0.82	+0.4
2,545,558	-		GFF5539	0.82	-0.1
2,545,558	-		GFF5539	0.82	+0.6
2,545,558	-		GFF5539	0.82	-0.3
2,545,570	+		GFF5539	0.84	+0.5
2,545,638	+				+0.9
2,545,639	-				+0.1
2,545,639	-				+0.4
2,545,912	+		GFF5540	0.12	-0.6
2,545,912	+		GFF5540	0.12	+0.5
2,545,912	+		GFF5540	0.12	+1.2
2,545,912	+		GFF5540	0.12	-0.1
2,545,912	+		GFF5540	0.12	+0.4
2,545,912	+		GFF5540	0.12	+0.4
2,545,912	+		GFF5540	0.12	+1.2
2,545,913	-		GFF5540	0.12	-0.4
2,545,913	-		GFF5540	0.12	-2.2
2,545,913	-		GFF5540	0.12	-0.4
2,545,913	-		GFF5540	0.12	+0.6
2,545,913	-		GFF5540	0.12	-0.0
2,545,955	-		GFF5540	0.15	+0.3
2,546,092	+		GFF5540	0.25	-0.4
2,546,092	+		GFF5540	0.25	-0.4
2,546,092	+		GFF5540	0.25	-0.4
2,546,092	+		GFF5540	0.25	-0.2
2,546,092	+		GFF5540	0.25	-0.8
2,546,092	+		GFF5540	0.25	-0.8
2,546,092	+		GFF5540	0.25	-0.4
2,546,092	+		GFF5540	0.25	-0.3
2,546,092	+		GFF5540	0.25	-0.0
2,546,092	+		GFF5540	0.25	+0.6
2,546,092	+		GFF5540	0.25	-1.6
2,546,161	+		GFF5540	0.30	-0.6
2,546,161	+		GFF5540	0.30	+0.4
2,546,162	-		GFF5540	0.30	+0.1
2,546,185	+		GFF5540	0.31	-0.0
2,546,185	+		GFF5540	0.31	-0.0
2,546,185	+		GFF5540	0.31	-0.3
2,546,186	-		GFF5540	0.31	-0.2
2,546,186	-		GFF5540	0.31	+0.9
2,546,186	-		GFF5540	0.31	+0.1
2,546,186	-		GFF5540	0.31	+0.1
2,546,192	-		GFF5540	0.32	+0.5
2,546,192	-		GFF5540	0.32	+1.4
2,546,257	+		GFF5540	0.36	+0.3
2,546,341	+		GFF5540	0.42	-0.7
2,546,346	+		GFF5540	0.43	-0.2
2,546,346	+		GFF5540	0.43	+0.9
2,546,346	+		GFF5540	0.43	+0.2
2,546,346	+		GFF5540	0.43	-0.2
2,546,346	+		GFF5540	0.43	-0.1
2,546,346	+		GFF5540	0.43	-1.8
2,546,347	-		GFF5540	0.43	+0.1
2,546,347	-		GFF5540	0.43	-1.0
2,546,468	-		GFF5540	0.51	+0.9
2,546,479	+		GFF5540	0.52	-0.0
2,546,479	+		GFF5540	0.52	+0.8
2,546,479	+		GFF5540	0.52	-0.0
2,546,480	-		GFF5540	0.52	-0.8
2,546,480	-		GFF5540	0.52	-0.3
2,546,480	-		GFF5540	0.52	-0.1
2,546,480	-		GFF5540	0.52	+2.5
2,546,480	-		GFF5540	0.52	-0.6
2,546,480	-		GFF5540	0.52	-0.4
2,546,647	+		GFF5540	0.64	+0.0
2,546,647	+		GFF5540	0.64	-0.2
2,546,647	+		GFF5540	0.64	+0.3
2,546,648	-		GFF5540	0.64	+0.0
2,546,648	-		GFF5540	0.64	-0.6
2,546,648	-		GFF5540	0.64	+0.2
2,546,689	+		GFF5540	0.67	+0.2
2,546,689	+		GFF5540	0.67	-0.2
2,546,689	+		GFF5540	0.67	+0.3
2,546,690	-		GFF5540	0.67	-0.5
2,546,690	-		GFF5540	0.67	-0.1
2,546,690	-		GFF5540	0.67	+0.5
2,546,690	-		GFF5540	0.67	+0.6
2,546,693	-		GFF5540	0.67	+0.1