Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5533

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,538,045	-		GFF5532	0.53	-0.2
2,538,045	-		GFF5532	0.53	+1.2
2,538,158	+		GFF5532	0.58	+0.1
2,538,158	+		GFF5532	0.58	+1.4
2,538,164	+		GFF5532	0.59	-0.5
2,538,165	-		GFF5532	0.59	+0.6
2,538,165	-		GFF5532	0.59	+0.4
2,538,185	+		GFF5532	0.60	-0.1
2,538,341	+		GFF5532	0.68	+0.4
2,538,585	-		GFF5532	0.80	-1.1
2,538,585	-		GFF5532	0.80	+0.5
2,538,656	+		GFF5532	0.83	-0.2
2,538,656	+		GFF5532	0.83	-0.0
2,538,656	+		GFF5532	0.83	-0.5
2,538,657	-		GFF5532	0.83	-1.1
2,538,657	-		GFF5532	0.83	-1.0
2,538,657	-		GFF5532	0.83	+0.5
2,538,657	-		GFF5532	0.83	-0.8
2,538,657	-		GFF5532	0.83	+0.2
2,538,906	-				-0.6
2,539,108	+		GFF5533	0.11	-0.8
2,539,108	+		GFF5533	0.11	-0.3
2,539,114	+		GFF5533	0.11	+1.0
2,539,114	+		GFF5533	0.11	-0.8
2,539,114	+		GFF5533	0.11	-0.3
2,539,114	+		GFF5533	0.11	+0.1
2,539,115	-		GFF5533	0.11	-0.5
2,539,423	+		GFF5533	0.40	+0.1
2,539,600	+		GFF5533	0.56	-0.0
2,539,601	-		GFF5533	0.56	-0.1
2,539,601	-		GFF5533	0.56	-0.0
2,539,601	-		GFF5533	0.56	-1.0
2,539,651	+		GFF5533	0.61	-0.6
2,539,661	-		GFF5533	0.62	-0.8
2,539,729	+		GFF5533	0.68	-0.2
2,539,729	+		GFF5533	0.68	-0.3
2,539,730	-		GFF5533	0.68	-0.1
2,539,730	-		GFF5533	0.68	+0.4
2,539,730	-		GFF5533	0.68	-0.3
2,539,957	+		GFF5533	0.89	+0.4
2,539,958	-		GFF5533	0.89	+1.9
2,539,958	-		GFF5533	0.89	+0.6
2,539,958	-		GFF5533	0.89	+0.0
2,539,981	+				-0.0
2,539,981	+				+0.2
2,539,982	-				-0.6
2,539,982	-				-0.2
2,539,982	-				+0.1
2,539,982	-				-0.1
2,539,982	-				-0.5
2,539,997	-				-0.2
2,540,011	+				+0.7
2,540,012	-				+0.0
2,540,014	+				-1.0
2,540,014	+				+0.4
2,540,015	-				+0.9
2,540,015	-				-1.5
2,540,162	+		GFF5534	0.16	-0.5
2,540,162	+		GFF5534	0.16	-0.6
2,540,162	+		GFF5534	0.16	-0.8
2,540,162	+		GFF5534	0.16	+0.3
2,540,163	-		GFF5534	0.17	-0.0
2,540,163	-		GFF5534	0.17	-1.7
2,540,363	+		GFF5534	0.76	+1.1
2,540,446	+				-0.1
2,540,447	-				-0.3
2,540,447	-				-0.1
2,540,519	+				+0.1
2,540,519	+				+0.1
2,540,519	+				-0.3
2,540,519	+				-0.3
2,540,519	+				-0.1
2,540,520	-				+0.3
2,540,520	-				-0.1
2,540,562	+				-0.2
2,540,563	-				-0.3
2,540,563	-				-0.5
2,540,830	-		GFF5535	0.36	-0.2
2,540,940	+		GFF5535	0.49	+0.1