Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5450

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,452,872	+				-0.1
2,452,872	+				-0.3
2,452,872	+				-0.1
2,452,873	-				+0.4
2,453,004	+				+0.8
2,453,051	-				-0.3
2,453,051	-				-0.0
2,453,125	-				+0.5
2,453,132	+				-0.8
2,453,132	+				+0.1
2,453,132	+				+0.8
2,453,132	+				+0.3
2,453,132	+				+0.4
2,453,132	+				+0.2
2,453,132	+				-0.3
2,453,133	-				-0.9
2,453,133	-				+1.0
2,453,133	-				+0.1
2,453,133	-				-0.1
2,453,135	+				-0.4
2,453,135	+				-0.4
2,453,136	-				+0.4
2,453,209	+				+0.3
2,453,209	+				+0.2
2,453,209	+				+0.9
2,453,210	-				-0.1
2,453,284	+				-0.4
2,453,284	+				-1.4
2,453,284	+				+0.1
2,453,285	-				-0.5
2,453,319	+				-0.6
2,453,320	-				+0.3
2,453,320	-				-0.1
2,453,359	+				-0.6
2,453,359	+				+0.0
2,453,359	+				+0.1
2,453,359	+				+0.3
2,453,360	-				+0.4
2,453,398	+				+0.3
2,453,398	+				-0.5
2,453,398	+				+1.3
2,453,398	+				-0.4
2,453,399	-				+0.5
2,453,683	+		GFF5450	0.14	+1.4
2,453,766	+		GFF5450	0.60	+0.3
2,453,766	+		GFF5450	0.60	+0.2
2,453,880	+				+0.9
2,453,893	+				-0.8
2,453,894	-				+0.5
2,453,899	+				-0.7
2,453,899	+				-0.6
2,453,900	-				+0.4
2,453,917	+				+1.1
2,453,917	+				+0.2
2,453,918	-				+0.2
2,454,052	-				+0.0
2,454,083	+				-0.2
2,454,083	+				+0.6
2,454,083	+				+1.4
2,454,084	-				-1.0
2,454,124	-				+2.2
2,454,133	+				-0.2
2,454,133	+				+0.2
2,454,172	+				-0.6
2,454,179	-				+0.8
2,454,179	-				+0.0
2,454,179	-				-1.1
2,454,195	-				-0.4
2,454,240	+				+0.4
2,454,240	+				+0.4
2,454,241	-				-1.6
2,454,342	+				-0.1
2,454,343	-				-0.2
2,454,343	-				-0.1
2,454,372	+				+0.0
2,454,372	+				-1.0
2,454,372	+				-0.9
2,454,372	+				-0.4
2,454,373	-				-0.3
2,454,460	-				-0.6
2,454,476	+				-0.6
2,454,476	+				-0.5
2,454,476	+				+0.9
2,454,477	-				+0.6
2,454,477	-				+0.7
2,454,477	-				+0.5
2,454,510	+				+0.3
2,454,510	+				-0.5
2,454,510	+				+0.2
2,454,510	+				+0.7
2,454,511	-				-2.1
2,454,511	-				+0.2
2,454,511	-				+0.4
2,454,511	-				+0.5
2,454,511	-				+0.2
2,454,511	-				+0.1
2,454,560	+				+0.2
2,454,560	+				+0.2
2,454,560	+				-1.1
2,454,560	+				-0.3
2,454,561	-				-0.1
2,454,561	-				+0.2
2,454,561	-				-1.6
2,454,561	-				+0.5
2,454,568	+				-1.1
2,454,603	+				+0.2
2,454,604	-				+0.0
2,454,613	+				-0.3
2,454,614	-				+0.0
2,454,614	-				-0.2
2,454,614	-				-0.9
2,454,614	-				+0.7
2,454,614	-				+1.4
2,454,675	+				-1.1
2,454,675	+				+0.1
2,454,675	+				+0.8
2,454,675	+				+0.8
2,454,676	-				+0.1
2,454,676	-				+0.7
2,454,676	-				+0.0
2,454,676	-				+0.1
2,454,676	-				+0.4
2,454,817	+				+0.3
2,454,818	-				+0.5