Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5444

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,446,885	+				-0.0
2,446,885	+				+0.3
2,446,885	+				+0.1
2,446,885	+				-0.1
2,446,885	+				-0.0
2,446,885	+				-0.0
2,446,885	+				-0.2
2,446,886	-				-0.2
2,446,897	+				-0.1
2,446,897	+				-1.5
2,446,897	+				+0.1
2,446,897	+				-0.8
2,446,897	+				-0.2
2,446,898	-				-0.1
2,446,898	-				+0.0
2,446,898	-				+0.7
2,446,898	-				+0.1
2,447,176	+				-0.3
2,447,176	+				+0.5
2,447,176	+				-0.4
2,447,176	+				+2.1
2,447,176	+				+1.6
2,447,271	+		GFF5444	0.11	-0.8
2,447,271	+		GFF5444	0.11	+1.4
2,447,271	+		GFF5444	0.11	-1.0
2,447,272	-		GFF5444	0.11	+1.0
2,447,472	+		GFF5444	0.42	+1.2
2,447,472	+		GFF5444	0.42	-1.8
2,447,473	-		GFF5444	0.42	+0.9
2,447,473	-		GFF5444	0.42	+0.3
2,447,473	-		GFF5444	0.42	-0.5
2,447,484	+		GFF5444	0.43	+0.2
2,447,676	+		GFF5444	0.73	-0.0
2,447,676	+		GFF5444	0.73	-1.2
2,447,676	+		GFF5444	0.73	+0.0
2,447,677	-		GFF5444	0.73	-2.1
2,447,677	-		GFF5444	0.73	+0.3
2,447,938	+				+0.4
2,448,205	+		GFF5445	0.35	-0.1
2,448,206	-		GFF5445	0.35	-0.6
2,448,367	+		GFF5445	0.52	+0.1
2,448,367	+		GFF5445	0.52	-0.8
2,448,367	+		GFF5445	0.52	+0.0
2,448,367	+		GFF5445	0.52	-0.3
2,448,367	+		GFF5445	0.52	-1.1
2,448,367	+		GFF5445	0.52	-1.0
2,448,368	-		GFF5445	0.52	+0.4
2,448,368	-		GFF5445	0.52	+0.1
2,448,368	-		GFF5445	0.52	-0.2
2,448,368	-		GFF5445	0.52	-0.0
2,448,368	-		GFF5445	0.52	-0.8
2,448,439	+		GFF5445	0.59	+0.4
2,448,439	+		GFF5445	0.59	+0.4
2,448,439	+		GFF5445	0.59	+0.3
2,448,440	-		GFF5445	0.59	-0.1