Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5368

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,368,868	-		GFF5366	0.78	+0.5
2,368,939	+		GFF5366	0.84	+0.2
2,368,940	-		GFF5366	0.84	+0.0
2,368,975	+		GFF5366	0.88	+1.4
2,368,975	+		GFF5366	0.88	+0.0
2,368,976	-		GFF5366	0.88	-0.6
2,368,976	-		GFF5366	0.88	-0.1
2,369,232	+				-0.2
2,369,233	-				-1.4
2,369,241	+				+0.0
2,369,241	+				-0.0
2,369,242	-				+0.2
2,369,242	-				-0.3
2,369,242	-				+0.4
2,369,390	+		GFF5367	0.13	+1.3
2,369,448	-		GFF5367	0.25	-0.2
2,369,825	-				+0.3
2,370,220	+		GFF5368	0.43	+0.6
2,370,799	+				+0.7
2,370,877	+				+0.0
2,370,877	+				-0.9
2,370,877	+				-0.0
2,370,878	-				-0.2
2,371,063	+		GFF5369	0.30	+0.3
2,371,064	-		GFF5369	0.30	+0.1
2,371,064	-		GFF5369	0.30	+0.6
2,371,342	+		GFF5369	0.69	+1.0
2,371,342	+		GFF5369	0.69	+0.3
2,371,342	+		GFF5369	0.69	-0.2
2,371,343	-		GFF5369	0.69	+1.2