Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5327

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,330,133	-				-0.7
2,330,652	+		GFF5327	0.45	+0.4
2,330,652	+		GFF5327	0.45	-0.3
2,330,652	+		GFF5327	0.45	+0.4
2,330,653	-		GFF5327	0.45	-0.7
2,331,127	-		GFF5328	0.27	-0.5
2,331,227	+		GFF5328	0.46	+0.5
2,331,227	+		GFF5328	0.46	-0.7
2,331,228	-		GFF5328	0.46	+0.2
2,331,314	+		GFF5328	0.63	-0.3
2,331,315	-		GFF5328	0.63	+0.2
2,331,315	-		GFF5328	0.63	-0.6
2,331,533	+				-0.7
2,331,534	-				-0.1
2,331,534	-				-0.0
2,331,537	+				+0.4
2,331,537	+				+0.3
2,331,537	+				+0.4
2,331,537	+				+0.5
2,331,538	-				+0.7
2,331,538	-				-1.6
2,331,538	-				-0.2
2,331,559	+				-0.4
2,331,785	-		GFF5329	0.63	-0.6
2,331,785	-		GFF5329	0.63	+0.3
2,331,785	-		GFF5329	0.63	-0.5
2,331,818	-		GFF5329	0.89	-0.6
2,331,837	+				-0.5
2,331,846	+				+0.3
2,331,847	-				-1.1
2,332,028	+		GFF5330	0.51	-1.0
2,332,028	+		GFF5330	0.51	+0.4
2,332,028	+		GFF5330	0.51	+0.2
2,332,029	-		GFF5330	0.51	-0.1
2,332,029	-		GFF5330	0.51	-0.4
2,332,029	-		GFF5330	0.51	-0.4