Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5278

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,291,363	+		GFF5277	0.22	+0.4
2,291,363	+		GFF5277	0.22	+0.2
2,291,364	-		GFF5277	0.22	+0.3
2,291,516	+		GFF5277	0.42	-0.2
2,291,516	+		GFF5277	0.42	-0.1
2,291,516	+		GFF5277	0.42	+1.1
2,291,517	-		GFF5277	0.42	-0.1
2,291,681	+		GFF5277	0.63	-0.5
2,291,693	+		GFF5277	0.65	+0.5
2,291,748	-		GFF5277	0.72	+0.6
2,291,762	+		GFF5277	0.74	-0.9
2,292,283	+		GFF5278	0.47	+0.2
2,292,284	-		GFF5278	0.47	-1.2
2,292,284	-		GFF5278	0.47	-0.4
2,292,286	+		GFF5278	0.47	-0.3
2,292,295	+		GFF5278	0.49	+0.5
2,292,509	-		GFF5278	0.85	+0.8
2,292,509	-		GFF5278	0.85	+0.6
2,292,756	+				-0.1
2,292,757	-				-0.1
2,292,774	+				-0.3
2,292,775	-				-0.1
2,292,789	-				-1.1
2,292,882	+				-0.2
2,292,883	-				-0.2
2,292,883	-				-0.2
2,292,883	-				+0.1
2,292,883	-				-0.6
2,292,900	+				+0.5
2,292,901	-				-0.2
2,292,901	-				-0.4
2,292,901	-				-0.1
2,292,985	-				+1.8
2,293,116	+				-0.3
2,293,116	+				-0.2
2,293,117	-				+0.8