Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5130

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
2,140,885	+		GFF5129	0.34	+0.8
2,140,885	+		GFF5129	0.34	+0.3
2,140,886	-		GFF5129	0.34	+0.2
2,140,886	-		GFF5129	0.34	+0.5
2,140,978	+		GFF5129	0.44	-0.7
2,140,979	-		GFF5129	0.44	-0.0
2,140,979	-		GFF5129	0.44	-0.5
2,140,979	-		GFF5129	0.44	-0.3
2,140,979	-		GFF5129	0.44	+0.2
2,140,979	-		GFF5129	0.44	+0.1
2,140,999	-		GFF5129	0.46	+1.1
2,141,155	+		GFF5129	0.62	-0.9
2,141,156	-		GFF5129	0.62	+1.0
2,141,284	+		GFF5129	0.75	-0.6
2,141,554	+				+0.1
2,141,555	-				+0.2
2,141,644	-				+0.1
2,141,946	+		GFF5130	0.43	+1.4
2,141,947	-		GFF5130	0.43	+0.5
2,141,947	-		GFF5130	0.43	+0.8
2,142,309	+				+0.5
2,142,476	+				+0.4
2,142,476	+				+1.0
2,142,573	-		GFF5131	0.14	+0.2
2,142,708	-		GFF5131	0.24	+0.6
2,142,708	-		GFF5131	0.24	-0.4
2,142,708	-		GFF5131	0.24	+0.3
2,142,708	-		GFF5131	0.24	+0.6
2,142,729	-		GFF5131	0.25	+0.4
2,142,740	+		GFF5131	0.26	+0.9
2,142,794	+		GFF5131	0.30	+0.5
2,142,794	+		GFF5131	0.30	-0.2
2,142,795	-		GFF5131	0.30	+0.5