Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4756

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
1,762,117	+				+1.0
1,762,117	+				+0.7
1,762,118	-				-0.2
1,762,118	-				-0.2
1,762,118	-				-0.5
1,762,138	-				-0.1
1,762,146	+				+0.0
1,762,146	+				-0.5
1,762,147	-				+0.4
1,762,147	-				-1.1
1,762,147	-				-0.6
1,762,179	-				+0.4
1,762,221	+				-0.2
1,762,222	-				-0.7
1,762,222	-				+0.1
1,762,222	-				-0.1
1,762,224	+				+0.2
1,762,225	-				-0.4
1,762,225	-				+0.2
1,762,225	-				+0.4
1,762,225	-				+0.0
1,762,225	-				+0.2
1,762,260	+				+0.2
1,762,261	-				-0.2
1,762,261	-				+0.2
1,762,261	-				-0.4
1,762,261	-				+0.7
1,762,261	-				-0.2
1,762,262	+				+0.3
1,762,262	+				-0.0
1,762,262	+				-0.0
1,762,262	+				-0.1
1,762,262	+				-0.2
1,762,262	+				-0.7
1,762,263	-				+0.5
1,762,263	-				-0.4
1,762,263	-				-0.1
1,762,263	-				+0.4
1,762,263	-				+0.0
1,762,263	-				+0.8
1,762,263	-				-0.1
1,762,263	-				+0.1
1,762,263	-				-0.1
1,762,294	+				-0.0
1,762,294	+				-0.7
1,762,294	+				+0.4
1,762,294	+				-0.0
1,762,294	+				-1.2
1,762,294	+				+0.0
1,762,295	-				-1.2
1,762,295	-				+0.2
1,763,044	+				-0.9
1,763,271	+		GFF4756	0.19	+0.9
1,763,272	-		GFF4756	0.19	+0.9
1,763,272	-		GFF4756	0.19	+0.0
1,763,272	-		GFF4756	0.19	+0.0
1,763,272	-		GFF4756	0.19	-0.4
1,763,388	+		GFF4756	0.30	-0.7
1,763,388	+		GFF4756	0.30	+1.5
1,763,388	+		GFF4756	0.30	+0.1
1,763,388	+		GFF4756	0.30	+0.7
1,763,389	-		GFF4756	0.30	-0.1
1,763,389	-		GFF4756	0.30	+0.2
1,763,718	+		GFF4756	0.59	+0.2
1,763,718	+		GFF4756	0.59	+1.1
1,763,718	+		GFF4756	0.59	-0.7
1,763,719	-		GFF4756	0.59	+0.0
1,763,719	-		GFF4756	0.59	+0.1
1,763,719	-		GFF4756	0.59	+0.2
1,763,719	-		GFF4756	0.59	-0.1
1,763,722	-		GFF4756	0.60	+0.3
1,763,733	+		GFF4756	0.61	+0.9
1,763,748	+		GFF4756	0.62	-1.5
1,763,748	+		GFF4756	0.62	-0.2
1,763,820	+		GFF4756	0.68	-0.2
1,763,857	-		GFF4756	0.72	-1.6
1,763,932	-		GFF4756	0.78	+0.2
1,764,093	+				-0.7
1,764,094	-				-0.2
1,764,112	-				-0.1
1,764,494	+		GFF4757	0.32	-0.0
1,764,494	+		GFF4757	0.32	+0.3
1,764,536	+		GFF4757	0.37	-1.2
1,764,536	+		GFF4757	0.37	-0.2
1,764,536	+		GFF4757	0.37	-0.3
1,764,537	-		GFF4757	0.37	+0.3
1,764,545	+		GFF4757	0.38	+0.8
1,764,545	+		GFF4757	0.38	-1.7
1,764,546	-		GFF4757	0.38	-1.0
1,764,638	+		GFF4757	0.49	-0.6
1,764,642	-		GFF4757	0.50	-0.3
1,764,649	+		GFF4757	0.50	-0.5
1,764,692	+		GFF4757	0.55	+0.3
1,764,693	-		GFF4757	0.55	+0.3
1,764,693	-		GFF4757	0.55	-0.1
1,764,770	+		GFF4757	0.64	+1.0
1,764,770	+		GFF4757	0.64	+1.2
1,764,818	+		GFF4757	0.70	-0.9
1,764,818	+		GFF4757	0.70	+0.5
1,764,818	+		GFF4757	0.70	-0.3
1,764,818	+		GFF4757	0.70	-0.6
1,764,818	+		GFF4757	0.70	-1.8
1,764,819	-		GFF4757	0.70	+0.4
1,764,819	-		GFF4757	0.70	+0.2
1,764,819	-		GFF4757	0.70	-0.2
1,764,929	+		GFF4757	0.83	+1.2
1,764,929	+		GFF4757	0.83	-1.2
1,764,929	+		GFF4757	0.83	+0.5
1,764,929	+		GFF4757	0.83	-0.4
1,764,929	+		GFF4757	0.83	-0.2
1,764,930	-		GFF4757	0.83	-0.0
1,764,930	-		GFF4757	0.83	-0.4
1,764,930	-		GFF4757	0.83	+0.3
1,764,930	-		GFF4757	0.83	-0.0
1,764,930	-		GFF4757	0.83	+0.1
1,765,125	-				+1.2