Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4753

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
1,756,155	+				-0.3
1,756,156	-				-0.5
1,756,156	-				-0.7
1,756,269	+				-1.0
1,756,270	-				-0.5
1,756,401	+				+0.2
1,756,402	-				-1.7
1,756,486	-				+0.2
1,756,883	+				-0.3
1,756,883	+				+0.1
1,756,884	-				-0.5
1,757,157	-				-0.7
1,757,447	+		GFF4753	0.16	-0.0
1,757,447	+		GFF4753	0.16	+0.3
1,757,447	+		GFF4753	0.16	+0.5
1,757,448	-		GFF4753	0.16	+0.1
1,757,448	-		GFF4753	0.16	-0.5
1,757,921	+		GFF4753	0.27	-0.6
1,757,922	-		GFF4753	0.27	+1.8
1,757,922	-		GFF4753	0.27	+0.1
1,758,087	-		GFF4753	0.31	+0.3
1,758,288	-		GFF4753	0.35	+0.7
1,758,884	+		GFF4753	0.48	-0.7
1,758,935	+		GFF4753	0.49	+0.1
1,759,383	-		GFF4753	0.59	-1.0
1,759,383	-		GFF4753	0.59	-0.1
1,760,277	+		GFF4753	0.79	+0.0
1,760,278	-		GFF4753	0.79	+0.7
1,760,280	-		GFF4753	0.79	+0.6
1,760,417	+		GFF4753	0.82	+0.3
1,760,417	+		GFF4753	0.82	-0.0
1,760,418	-		GFF4753	0.82	+0.6
1,760,418	-		GFF4753	0.82	-0.8
1,760,493	-		GFF4753	0.84	-0.2
1,760,493	-		GFF4753	0.84	+0.3
1,760,720	+		GFF4753	0.89	+1.3
1,760,720	+		GFF4753	0.89	+0.5
1,760,744	+		GFF4753	0.90	+0.4
1,761,053	+				+0.4
1,761,054	-				-0.9
1,761,054	-				+0.1
1,761,299	-		GFF4754	0.12	+0.1
1,761,299	-		GFF4754	0.12	-0.1
1,761,299	-		GFF4754	0.12	+0.3
1,761,890	-		GFF4754	0.88	-0.0
1,761,890	-		GFF4754	0.88	+0.2
1,762,117	+				+1.0
1,762,117	+				+0.7
1,762,118	-				-0.2
1,762,118	-				-0.2
1,762,118	-				-0.5
1,762,138	-				-0.1
1,762,146	+				+0.0
1,762,146	+				-0.5
1,762,147	-				+0.4
1,762,147	-				-1.1
1,762,147	-				-0.6
1,762,179	-				+0.4