Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4635

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
1,585,134	+				-0.4
1,585,135	-				-0.4
1,585,135	-				-0.6
1,585,290	+		GFF4634	0.23	-0.0
1,585,290	+		GFF4634	0.23	-0.3
1,585,290	+		GFF4634	0.23	-0.1
1,585,291	-		GFF4634	0.24	-0.5
1,585,291	-		GFF4634	0.24	+1.8
1,585,302	+		GFF4634	0.25	-0.8
1,585,542	+		GFF4634	0.49	+0.1
1,585,542	+		GFF4634	0.49	-0.1
1,585,543	-		GFF4634	0.49	-0.1
1,585,758	+		GFF4634	0.71	+0.6
1,585,758	+		GFF4634	0.71	+0.1
1,585,758	+		GFF4634	0.71	-0.3
1,585,759	-		GFF4634	0.71	-0.5
1,585,759	-		GFF4634	0.71	+0.1
1,585,759	-		GFF4634	0.71	-0.2
1,585,759	-		GFF4634	0.71	-0.1
1,585,759	-		GFF4634	0.71	+1.3
1,585,779	+		GFF4634	0.73	+0.0
1,585,779	+		GFF4634	0.73	-0.1
1,585,780	-		GFF4634	0.73	-0.9
1,585,780	-		GFF4634	0.73	+0.5
1,585,780	-		GFF4634	0.73	-3.1
1,585,926	+		GFF4634	0.88	-0.8
1,585,926	+		GFF4634	0.88	-0.3
1,585,926	+		GFF4634	0.88	-0.5
1,585,927	-		GFF4634	0.88	-0.0
1,585,927	-		GFF4634	0.88	+0.6
1,585,927	-		GFF4634	0.88	+0.0
1,585,927	-		GFF4634	0.88	-0.3
1,586,062	-				-0.5
1,586,315	-		GFF4635	0.33	+0.1
1,586,315	-		GFF4635	0.33	+0.3
1,586,453	-		GFF4635	0.50	+0.9
1,586,866	-				+0.3
1,586,867	+				+0.5
1,586,867	+				-1.9
1,586,867	+				-0.3
1,586,867	+				-0.4
1,586,867	+				+0.3
1,586,867	+				-0.9
1,586,867	+				-0.6
1,586,867	+				+0.1
1,586,868	-				+0.3
1,586,868	-				-1.3
1,586,868	-				-0.5
1,586,868	-				+0.5
1,586,868	-				-1.7
1,586,868	-				-0.5
1,586,873	+				-0.8
1,586,873	+				-0.1
1,586,873	+				-0.5
1,586,874	-				+0.0
1,586,874	-				-0.7
1,586,874	-				+0.1
1,586,911	+				+1.0
1,586,911	+				-0.6
1,586,912	-				-0.1
1,587,010	+				-0.1
1,587,092	-		GFF4636	0.43	+0.3
1,587,143	+		GFF4636	0.70	-0.1
1,587,286	-		GFF4637	0.20	-2.5
1,587,316	+		GFF4637	0.26	+0.6
1,587,396	+		GFF4637	0.44	-0.4
1,587,396	+		GFF4637	0.44	+0.1
1,587,397	-		GFF4637	0.44	+0.5
1,587,456	+		GFF4637	0.57	+0.1
1,587,456	+		GFF4637	0.57	-1.0
1,587,457	-		GFF4637	0.57	+1.3
1,587,457	-		GFF4637	0.57	-0.2