Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4567

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4566 and GFF4567 are separated by 6 nucleotidesGFF4567 and GFF4568 are separated by 3 nucleotidesGFF4568 and GFF4569 are separated by 12 nucleotides GFF4566 - Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3), at 1,506,883 to 1,510,893 GFF4566 GFF4567 - hypothetical protein, at 1,510,900 to 1,511,172 GFF4567 GFF4568 - Phytanoyl-CoA dioxygenase, at 1,511,176 to 1,512,009 GFF4568 GFF4569 - Membrane protein, putative, at 1,512,022 to 1,512,993 GFF4569 Position (kb) 1510 1511 1512Strain fitness (log2 ratio) -2 -1 0 1at 1510.957 kb on + strand, within GFF4567at 1510.958 kb on - strand, within GFF4567at 1511.047 kb on + strand, within GFF4567at 1511.047 kb on + strand, within GFF4567at 1511.048 kb on - strand, within GFF4567at 1511.048 kb on - strand, within GFF4567at 1511.048 kb on - strand, within GFF4567at 1511.134 kb on + strand, within GFF4567at 1511.135 kb on - strand, within GFF4567at 1511.135 kb on - strand, within GFF4567at 1511.399 kb on - strand, within GFF4568at 1511.399 kb on - strand, within GFF4568at 1511.473 kb on + strand, within GFF4568at 1511.473 kb on + strand, within GFF4568at 1511.473 kb on + strand, within GFF4568at 1511.474 kb on - strand, within GFF4568at 1511.474 kb on - strand, within GFF4568at 1511.474 kb on - strand, within GFF4568at 1511.542 kb on + strand, within GFF4568at 1511.542 kb on + strand, within GFF4568at 1511.542 kb on + strand, within GFF4568at 1511.542 kb on + strand, within GFF4568at 1511.542 kb on + strand, within GFF4568at 1511.542 kb on + strand, within GFF4568at 1511.543 kb on - strand, within GFF4568at 1511.543 kb on - strand, within GFF4568at 1511.543 kb on - strand, within GFF4568at 1511.543 kb on - strand, within GFF4568at 1511.545 kb on + strand, within GFF4568at 1511.545 kb on + strand, within GFF4568at 1511.545 kb on + strand, within GFF4568at 1511.545 kb on + strand, within GFF4568at 1511.545 kb on + strand, within GFF4568at 1511.545 kb on + strand, within GFF4568at 1511.545 kb on + strand, within GFF4568at 1511.545 kb on + strand, within GFF4568at 1511.546 kb on - strand, within GFF4568at 1511.546 kb on - strand, within GFF4568at 1511.546 kb on - strand, within GFF4568at 1511.650 kb on + strand, within GFF4568at 1511.650 kb on + strand, within GFF4568at 1511.650 kb on + strand, within GFF4568at 1511.650 kb on + strand, within GFF4568at 1511.650 kb on + strand, within GFF4568at 1511.651 kb on - strand, within GFF4568at 1511.651 kb on - strand, within GFF4568at 1511.651 kb on - strand, within GFF4568at 1511.651 kb on - strand, within GFF4568at 1511.651 kb on - strand, within GFF4568at 1511.651 kb on - strand, within GFF4568at 1511.860 kb on + strand, within GFF4568at 1511.861 kb on - strand, within GFF4568at 1511.861 kb on - strand, within GFF4568at 1512.076 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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1,510,957 + GFF4567 0.21 +1.1
1,510,958 - GFF4567 0.21 +0.1
1,511,047 + GFF4567 0.54 +0.7
1,511,047 + GFF4567 0.54 -0.4
1,511,048 - GFF4567 0.54 +0.2
1,511,048 - GFF4567 0.54 -0.4
1,511,048 - GFF4567 0.54 -1.8
1,511,134 + GFF4567 0.86 +0.2
1,511,135 - GFF4567 0.86 +0.5
1,511,135 - GFF4567 0.86 -0.1
1,511,399 - GFF4568 0.27 +0.3
1,511,399 - GFF4568 0.27 -0.3
1,511,473 + GFF4568 0.36 -1.5
1,511,473 + GFF4568 0.36 -0.0
1,511,473 + GFF4568 0.36 +0.2
1,511,474 - GFF4568 0.36 +0.6
1,511,474 - GFF4568 0.36 +0.1
1,511,474 - GFF4568 0.36 +0.2
1,511,542 + GFF4568 0.44 +0.6
1,511,542 + GFF4568 0.44 -1.6
1,511,542 + GFF4568 0.44 +0.1
1,511,542 + GFF4568 0.44 -0.2
1,511,542 + GFF4568 0.44 +0.6
1,511,542 + GFF4568 0.44 -1.5
1,511,543 - GFF4568 0.44 -0.2
1,511,543 - GFF4568 0.44 -0.4
1,511,543 - GFF4568 0.44 -0.5
1,511,543 - GFF4568 0.44 +0.1
1,511,545 + GFF4568 0.44 -0.4
1,511,545 + GFF4568 0.44 -0.8
1,511,545 + GFF4568 0.44 +1.2
1,511,545 + GFF4568 0.44 +0.2
1,511,545 + GFF4568 0.44 -0.1
1,511,545 + GFF4568 0.44 +0.6
1,511,545 + GFF4568 0.44 +0.4
1,511,545 + GFF4568 0.44 +0.1
1,511,546 - GFF4568 0.44 -0.3
1,511,546 - GFF4568 0.44 +0.2
1,511,546 - GFF4568 0.44 -0.2
1,511,650 + GFF4568 0.57 -1.0
1,511,650 + GFF4568 0.57 -1.3
1,511,650 + GFF4568 0.57 +0.3
1,511,650 + GFF4568 0.57 -0.3
1,511,650 + GFF4568 0.57 +0.9
1,511,651 - GFF4568 0.57 -0.2
1,511,651 - GFF4568 0.57 +0.4
1,511,651 - GFF4568 0.57 +0.1
1,511,651 - GFF4568 0.57 +0.3
1,511,651 - GFF4568 0.57 -0.3
1,511,651 - GFF4568 0.57 +0.0
1,511,860 + GFF4568 0.82 -0.3
1,511,861 - GFF4568 0.82 +0.4
1,511,861 - GFF4568 0.82 -1.5
1,512,076 + +0.0

Or see this region's nucleotide sequence