Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4510

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
1,433,977	-		GFF4509	0.51	-0.4
1,434,084	+		GFF4509	0.76	-1.0
1,434,084	+		GFF4509	0.76	-0.4
1,434,084	+		GFF4509	0.76	+0.9
1,434,084	+		GFF4509	0.76	+0.8
1,434,085	-		GFF4509	0.76	-2.0
1,434,085	-		GFF4509	0.76	+0.4
1,434,085	-		GFF4509	0.76	-2.4
1,434,085	-		GFF4509	0.76	-0.6
1,434,085	-		GFF4509	0.76	+0.2
1,434,085	-		GFF4509	0.76	-0.5
1,434,085	-		GFF4509	0.76	-0.0
1,434,187	+				+1.0
1,434,187	+				-1.3
1,434,187	+				-2.2
1,434,187	+				-0.5
1,434,188	-				+0.2
1,434,188	-				+0.4
1,434,257	+		GFF4510	0.11	-0.4
1,434,257	+		GFF4510	0.11	-0.2
1,434,257	+		GFF4510	0.11	-0.5
1,434,257	+		GFF4510	0.11	-0.7
1,434,258	-		GFF4510	0.11	+0.4
1,434,258	-		GFF4510	0.11	+0.7
1,434,258	-		GFF4510	0.11	-0.3
1,434,258	-		GFF4510	0.11	+0.4
1,434,281	+		GFF4510	0.15	-0.4
1,434,335	+		GFF4510	0.23	-1.4
1,434,335	+		GFF4510	0.23	+0.1
1,434,335	+		GFF4510	0.23	-1.2
1,434,335	+		GFF4510	0.23	+0.3
1,434,503	+		GFF4510	0.49	-2.0
1,434,503	+		GFF4510	0.49	-0.7
1,434,590	+		GFF4510	0.63	+0.7
1,434,590	+		GFF4510	0.63	-1.0
1,434,590	+		GFF4510	0.63	+0.3
1,434,590	+		GFF4510	0.63	+0.4
1,434,591	-		GFF4510	0.63	-1.0
1,434,591	-		GFF4510	0.63	-0.6
1,434,591	-		GFF4510	0.63	+1.7
1,434,591	-		GFF4510	0.63	-0.3
1,434,817	+				-1.1
1,434,817	+				-0.3
1,434,817	+				+0.7
1,434,817	+				-1.4
1,434,817	+				+1.0
1,434,817	+				-0.9
1,434,817	+				-0.0
1,434,817	+				+0.6
1,434,817	+				-0.1
1,434,817	+				+0.4
1,434,817	+				-0.9
1,434,817	+				-0.4
1,434,817	+				-0.6
1,434,818	-				-0.0
1,434,818	-				+1.7
1,434,818	-				-0.4
1,434,818	-				-1.0
1,434,818	-				-1.5
1,434,818	-				+0.2
1,434,818	-				-1.2
1,434,818	-				+1.5
1,434,888	+				-1.9
1,434,888	+				-1.0
1,434,888	+				-1.0
1,434,888	+				-1.7
1,434,889	-				-0.1
1,434,889	-				-1.9
1,434,889	-				-0.2
1,434,889	-				+0.2
1,434,889	-				+0.5
1,434,889	-				+0.4
1,434,889	-				-0.3
1,434,889	-				-0.1
1,434,889	-				-0.0
1,434,999	-				-0.2
1,435,357	+		GFF4511	0.15	-1.5
1,435,357	+		GFF4511	0.15	-0.6
1,435,357	+		GFF4511	0.15	-0.8
1,435,480	+		GFF4511	0.24	-0.2
1,435,480	+		GFF4511	0.24	-0.5
1,435,481	-		GFF4511	0.24	-0.4
1,435,481	-		GFF4511	0.24	+0.9
1,435,481	-		GFF4511	0.24	-1.0
1,435,714	-		GFF4511	0.42	+0.6
1,435,729	+		GFF4511	0.43	+0.2