Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4422

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
1,352,707	+		GFF4421	0.51	-1.5
1,352,708	-		GFF4421	0.51	+0.1
1,352,790	+		GFF4421	0.58	-0.1
1,352,790	+		GFF4421	0.58	-0.2
1,352,928	+		GFF4421	0.70	+1.0
1,352,999	-		GFF4421	0.76	+0.0
1,353,037	-		GFF4421	0.79	+2.6
1,353,150	+		GFF4421	0.89	-0.0
1,353,150	+		GFF4421	0.89	-0.8
1,353,575	+		GFF4422	0.13	-0.1
1,353,575	+		GFF4422	0.13	-0.4
1,353,576	-		GFF4422	0.13	-0.3
1,353,576	-		GFF4422	0.13	-0.6
1,353,623	+		GFF4422	0.16	+0.3
1,353,624	-		GFF4422	0.16	+0.4
1,353,624	-		GFF4422	0.16	+0.0
1,353,995	+		GFF4422	0.39	-0.1
1,353,996	-		GFF4422	0.39	-0.0
1,354,020	-		GFF4422	0.40	-2.0
1,354,109	+		GFF4422	0.46	-0.6
1,354,411	+		GFF4422	0.65	+0.0
1,354,412	-		GFF4422	0.65	+1.3
1,354,649	-		GFF4422	0.80	-1.7
1,354,649	-		GFF4422	0.80	-0.8
1,354,649	-		GFF4422	0.80	+0.0
1,354,649	-		GFF4422	0.80	-0.0
1,354,977	+				-0.3
1,354,977	+				-0.3
1,354,978	-				-0.4
1,354,978	-				+0.8
1,354,979	+				+1.0
1,354,979	+				-0.3
1,354,980	-				+0.7
1,354,980	-				+1.2
1,354,980	-				-0.2
1,354,980	-				+0.7
1,355,025	+				-0.2
1,355,026	-				+1.1
1,355,071	+				-0.6
1,355,072	-				+0.3
1,355,081	+				+0.6
1,355,323	-		GFF4423	0.28	-0.0
1,355,323	-		GFF4423	0.28	+0.2
1,355,323	-		GFF4423	0.28	+0.3
1,355,323	-		GFF4423	0.28	+0.3
1,355,360	-		GFF4423	0.33	-0.7
1,355,527	-		GFF4423	0.57	-0.2
1,355,555	+		GFF4423	0.61	-0.1
1,355,555	+		GFF4423	0.61	+0.1
1,355,605	-		GFF4423	0.68	+1.1