Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4412

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
1,342,805	-				+0.6
1,342,937	+		GFF4411	0.26	-0.2
1,342,937	+		GFF4411	0.26	+0.2
1,342,974	-		GFF4411	0.31	+1.7
1,342,974	-		GFF4411	0.31	+0.2
1,343,012	-		GFF4411	0.35	-0.8
1,343,012	-		GFF4411	0.35	-0.2
1,343,141	-		GFF4411	0.52	-0.4
1,343,251	+		GFF4411	0.65	+0.3
1,343,251	+		GFF4411	0.65	+0.2
1,343,252	-		GFF4411	0.65	-0.2
1,343,290	+		GFF4411	0.70	-0.7
1,343,291	-		GFF4411	0.70	+0.0
1,343,337	+		GFF4411	0.76	-0.7
1,343,338	-		GFF4411	0.76	+0.1
1,343,338	-		GFF4411	0.76	-0.0
1,343,490	+				-0.2
1,343,557	-				+0.0
1,343,628	-				+0.1
1,343,790	+				+0.2
1,343,790	+				-0.0
1,343,791	-				-0.5
1,343,791	-				+0.5
1,343,939	-		GFF4412	0.20	+0.2
1,343,965	+		GFF4412	0.23	+0.2
1,344,115	+		GFF4412	0.39	+0.1
1,344,172	+		GFF4412	0.45	+0.5
1,344,259	+		GFF4412	0.55	+0.8
1,344,259	+		GFF4412	0.55	+0.5
1,344,260	-		GFF4412	0.55	+0.2
1,344,260	-		GFF4412	0.55	-0.4
1,344,346	-		GFF4412	0.64	+1.0
1,344,346	-		GFF4412	0.64	+0.1
1,344,513	-		GFF4412	0.82	+0.2
1,344,559	+		GFF4412	0.87	-0.1
1,344,773	+				-0.3
1,344,773	+				-0.4
1,344,773	+				+0.2
1,344,777	+				-0.6
1,344,777	+				-1.0
1,344,827	+				+1.0
1,344,827	+				+0.5
1,344,828	-				-0.7
1,344,992	+		GFF4413	0.26	-0.4
1,344,992	+		GFF4413	0.26	-0.8
1,344,992	+		GFF4413	0.26	+0.1
1,344,993	-		GFF4413	0.27	-0.8
1,344,993	-		GFF4413	0.27	+0.1
1,344,993	-		GFF4413	0.27	+0.3
1,344,993	-		GFF4413	0.27	-1.1
1,344,993	-		GFF4413	0.27	-0.4
1,344,993	-		GFF4413	0.27	-0.1
1,345,223	+		GFF4413	0.53	+0.3
1,345,404	-		GFF4413	0.74	-0.4
1,345,413	-		GFF4413	0.75	-0.9
1,345,651	-				-0.7