Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF396 and GFF397 are separated by 160 nucleotides GFF397 and GFF398 are separated by 31 nucleotides GFF398 and GFF399 are separated by 31 nucleotides GFF399 and GFF400 overlap by 1 nucleotides
GFF396 - Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase, at 64,248 to 65,816
GFF396
GFF397 - Acyl-CoA-binding protein, at 65,977 to 66,231
GFF397
GFF398 - FIG00932785: hypothetical protein, at 66,263 to 66,598
GFF398
GFF399 - PUTATIVE ZINC PROTEASE PROTEIN, at 66,630 to 67,718
GFF399
GFF400 - Anaerobic dehydrogenases, typically selenocysteine-containing, at 67,718 to 69,748
GFF400
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 65.885 kb on + strand at 65.885 kb on + strand at 65.886 kb on - strand at 65.886 kb on - strand at 65.908 kb on + strand at 65.908 kb on + strand at 65.909 kb on - strand at 65.909 kb on - strand at 65.913 kb on + strand at 65.927 kb on + strand at 65.927 kb on + strand at 65.928 kb on - strand at 66.067 kb on + strand, within GFF397 at 66.067 kb on + strand, within GFF397 at 66.067 kb on + strand, within GFF397 at 66.076 kb on + strand, within GFF397 at 66.076 kb on + strand, within GFF397 at 66.076 kb on + strand, within GFF397 at 66.077 kb on - strand, within GFF397 at 66.077 kb on - strand, within GFF397 at 66.077 kb on - strand, within GFF397 at 66.077 kb on - strand, within GFF397 at 66.077 kb on - strand, within GFF397 at 66.202 kb on + strand, within GFF397 at 66.202 kb on + strand, within GFF397 at 66.203 kb on - strand, within GFF397 at 66.203 kb on - strand, within GFF397 at 66.203 kb on - strand, within GFF397 at 66.486 kb on + strand, within GFF398 at 66.486 kb on + strand, within GFF398 at 66.486 kb on + strand, within GFF398 at 66.486 kb on + strand, within GFF398 at 66.486 kb on + strand, within GFF398 at 66.486 kb on + strand, within GFF398 at 66.487 kb on - strand, within GFF398 at 66.733 kb on + strand at 66.733 kb on + strand at 66.733 kb on + strand at 66.733 kb on + strand at 66.734 kb on - strand at 66.734 kb on - strand at 66.734 kb on - strand at 66.800 kb on - strand, within GFF399 at 66.967 kb on + strand, within GFF399 at 66.967 kb on + strand, within GFF399 at 67.043 kb on - strand, within GFF399 at 67.151 kb on - strand, within GFF399 at 67.271 kb on - strand, within GFF399 at 67.286 kb on - strand, within GFF399 at 67.286 kb on - strand, within GFF399 at 67.351 kb on + strand, within GFF399 at 67.436 kb on - strand, within GFF399 at 67.466 kb on - strand, within GFF399 at 67.466 kb on - strand, within GFF399 at 67.474 kb on + strand, within GFF399 at 67.475 kb on - strand, within GFF399 at 67.475 kb on - strand, within GFF399 at 67.475 kb on - strand, within GFF399 at 67.642 kb on + strand at 67.642 kb on + strand at 67.642 kb on + strand at 67.643 kb on - strand at 67.645 kb on + strand at 67.761 kb on + strand at 67.761 kb on + strand at 67.761 kb on + strand at 67.762 kb on - strand at 68.443 kb on - strand, within GFF400 at 68.493 kb on + strand, within GFF400 at 68.493 kb on + strand, within GFF400 at 68.493 kb on + strand, within GFF400 at 68.494 kb on - strand, within GFF400 at 68.494 kb on - strand, within GFF400 at 68.494 kb on - strand, within GFF400 at 68.616 kb on + strand, within GFF400 at 68.617 kb on - strand, within GFF400
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 65,885 + +0.5 65,885 + +0.5 65,886 - +0.2 65,886 - +1.1 65,908 + +0.0 65,908 + +0.2 65,909 - -0.1 65,909 - -0.2 65,913 + -0.1 65,927 + +0.4 65,927 + +0.2 65,928 - -0.3 66,067 + GFF397 0.35 -0.1 66,067 + GFF397 0.35 -0.3 66,067 + GFF397 0.35 +0.3 66,076 + GFF397 0.39 +0.3 66,076 + GFF397 0.39 +0.4 66,076 + GFF397 0.39 +1.5 66,077 - GFF397 0.39 -0.3 66,077 - GFF397 0.39 +1.1 66,077 - GFF397 0.39 +0.8 66,077 - GFF397 0.39 -0.4 66,077 - GFF397 0.39 +1.2 66,202 + GFF397 0.88 -0.1 66,202 + GFF397 0.88 +1.0 66,203 - GFF397 0.89 +0.5 66,203 - GFF397 0.89 -0.3 66,203 - GFF397 0.89 +0.3 66,486 + GFF398 0.66 -0.6 66,486 + GFF398 0.66 -0.5 66,486 + GFF398 0.66 +0.4 66,486 + GFF398 0.66 -0.6 66,486 + GFF398 0.66 +0.3 66,486 + GFF398 0.66 +0.3 66,487 - GFF398 0.67 -0.1 66,733 + -1.0 66,733 + +0.1 66,733 + -1.0 66,733 + -0.4 66,734 - -0.9 66,734 - +1.3 66,734 - -0.1 66,800 - GFF399 0.16 -0.2 66,967 + GFF399 0.31 +0.3 66,967 + GFF399 0.31 +0.2 67,043 - GFF399 0.38 +0.1 67,151 - GFF399 0.48 +0.5 67,271 - GFF399 0.59 -0.3 67,286 - GFF399 0.60 +0.3 67,286 - GFF399 0.60 +0.6 67,351 + GFF399 0.66 -2.8 67,436 - GFF399 0.74 -0.6 67,466 - GFF399 0.77 +0.1 67,466 - GFF399 0.77 -0.5 67,474 + GFF399 0.78 -1.0 67,475 - GFF399 0.78 -0.2 67,475 - GFF399 0.78 +0.0 67,475 - GFF399 0.78 -0.7 67,642 + +0.3 67,642 + -0.2 67,642 + -0.6 67,643 - +0.2 67,645 + +0.1 67,761 + -2.0 67,761 + +0.9 67,761 + -0.3 67,762 - -0.2 68,443 - GFF400 0.36 +0.3 68,493 + GFF400 0.38 -1.1 68,493 + GFF400 0.38 -0.0 68,493 + GFF400 0.38 +0.2 68,494 - GFF400 0.38 +0.2 68,494 - GFF400 0.38 -0.6 68,494 - GFF400 0.38 -0.6 68,616 + GFF400 0.44 -0.3 68,617 - GFF400 0.44 -0.9
Or see this region's nucleotide sequence