Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3951 and GFF3952 are separated by 57 nucleotides GFF3952 and GFF3953 are separated by 24 nucleotides GFF3953 and GFF3954 overlap by 31 nucleotides GFF3954 and GFF3955 overlap by 4 nucleotides
GFF3951 - hypothetical protein, at 867,801 to 868,070
GFF3951
GFF3952 - Transcriptional regulator, TetR family, at 868,128 to 868,718
GFF3952
GFF3953 - hypothetical protein, at 868,743 to 869,261
GFF3953
GFF3954 - hypothetical protein, at 869,231 to 869,434
GFF3954
GFF3955 - Sugar phosphate isomerases/epimerase, at 869,431 to 870,309
GFF3955
Position (kb) 868
869
870 Strain fitness (log2 ratio) -1
0
1
2
3 at 868.273 kb on - strand, within GFF3952 at 868.459 kb on - strand, within GFF3952 at 868.459 kb on - strand, within GFF3952 at 868.918 kb on - strand, within GFF3953 at 869.020 kb on - strand, within GFF3953 at 869.020 kb on - strand, within GFF3953 at 869.020 kb on - strand, within GFF3953 at 869.193 kb on + strand, within GFF3953 at 869.194 kb on - strand, within GFF3953 at 869.232 kb on + strand at 869.233 kb on - strand at 869.233 kb on - strand at 869.720 kb on + strand, within GFF3955 at 869.720 kb on + strand, within GFF3955 at 869.721 kb on - strand, within GFF3955 at 869.825 kb on + strand, within GFF3955 at 869.825 kb on + strand, within GFF3955 at 869.826 kb on - strand, within GFF3955
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 868,273 - GFF3952 0.25 +3.3 868,459 - GFF3952 0.56 -0.1 868,459 - GFF3952 0.56 +0.2 868,918 - GFF3953 0.34 +1.7 869,020 - GFF3953 0.53 +0.4 869,020 - GFF3953 0.53 +0.5 869,020 - GFF3953 0.53 -0.8 869,193 + GFF3953 0.87 -0.2 869,194 - GFF3953 0.87 +0.4 869,232 + -0.2 869,233 - +0.1 869,233 - +0.2 869,720 + GFF3955 0.33 -0.3 869,720 + GFF3955 0.33 +0.2 869,721 - GFF3955 0.33 -0.1 869,825 + GFF3955 0.45 +0.4 869,825 + GFF3955 0.45 -0.3 869,826 - GFF3955 0.45 +0.1
Or see this region's nucleotide sequence