Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3830

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3828 and GFF3829 are separated by 207 nucleotidesGFF3829 and GFF3830 are separated by 194 nucleotidesGFF3830 and GFF3831 overlap by 4 nucleotidesGFF3831 and GFF3832 overlap by 4 nucleotides GFF3828 - UPF0028 protein YchK, at 736,694 to 737,497 GFF3828 GFF3829 - granule-associated protein, at 737,705 to 738,244 GFF3829 GFF3830 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 738,439 to 739,461 GFF3830 GFF3831 - putative 4-hydroxybenzoyl-CoA thioesterase, at 739,458 to 739,910 GFF3831 GFF3832 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 739,907 to 740,629 GFF3832 Position (kb) 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1at 737.527 kb on - strandat 737.637 kb on + strandat 737.637 kb on + strandat 737.637 kb on + strandat 737.637 kb on + strandat 737.638 kb on - strandat 737.640 kb on + strandat 737.640 kb on + strandat 737.640 kb on + strandat 737.640 kb on + strandat 737.640 kb on + strandat 737.641 kb on - strandat 737.641 kb on - strandat 737.641 kb on - strandat 737.641 kb on - strandat 737.706 kb on + strandat 737.706 kb on + strandat 737.991 kb on + strand, within GFF3829at 737.991 kb on + strand, within GFF3829at 738.006 kb on + strand, within GFF3829at 738.006 kb on + strand, within GFF3829at 738.006 kb on + strand, within GFF3829at 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.253 kb on + strandat 738.253 kb on + strandat 738.254 kb on - strandat 738.283 kb on + strandat 738.284 kb on - strandat 738.284 kb on - strandat 738.284 kb on - strandat 738.364 kb on + strandat 738.364 kb on + strandat 738.364 kb on + strandat 738.364 kb on + strandat 738.365 kb on - strandat 738.365 kb on - strandat 738.365 kb on - strandat 738.365 kb on - strandat 738.366 kb on + strandat 738.416 kb on + strandat 738.417 kb on - strandat 738.430 kb on + strandat 738.431 kb on - strandat 738.431 kb on - strandat 738.490 kb on + strandat 738.490 kb on + strandat 738.490 kb on + strandat 738.491 kb on - strandat 738.491 kb on - strandat 738.491 kb on - strandat 738.491 kb on - strandat 738.491 kb on - strandat 738.493 kb on + strandat 738.494 kb on - strandat 738.494 kb on - strandat 738.655 kb on + strand, within GFF3830at 738.656 kb on - strand, within GFF3830at 738.656 kb on - strand, within GFF3830at 738.838 kb on + strand, within GFF3830at 738.838 kb on + strand, within GFF3830at 738.838 kb on + strand, within GFF3830at 738.839 kb on - strand, within GFF3830at 738.839 kb on - strand, within GFF3830at 738.839 kb on - strand, within GFF3830at 738.839 kb on - strand, within GFF3830at 739.114 kb on + strand, within GFF3830at 739.115 kb on - strand, within GFF3830at 739.115 kb on - strand, within GFF3830at 739.180 kb on + strand, within GFF3830at 739.180 kb on + strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.366 kb on - strandat 739.366 kb on - strandat 739.366 kb on - strandat 739.560 kb on + strand, within GFF3831at 739.560 kb on + strand, within GFF3831at 739.560 kb on + strand, within GFF3831at 739.560 kb on + strand, within GFF3831at 739.560 kb on + strand, within GFF3831at 739.560 kb on + strand, within GFF3831at 739.561 kb on - strand, within GFF3831at 739.561 kb on - strand, within GFF3831at 739.561 kb on - strand, within GFF3831at 739.561 kb on - strand, within GFF3831at 739.585 kb on - strand, within GFF3831at 739.585 kb on - strand, within GFF3831at 739.585 kb on - strand, within GFF3831at 739.587 kb on + strand, within GFF3831at 739.587 kb on + strand, within GFF3831at 739.587 kb on + strand, within GFF3831at 739.587 kb on + strand, within GFF3831at 739.587 kb on + strand, within GFF3831at 739.588 kb on - strand, within GFF3831at 739.588 kb on - strand, within GFF3831at 739.588 kb on - strand, within GFF3831at 739.692 kb on + strand, within GFF3831at 739.692 kb on + strand, within GFF3831at 739.692 kb on + strand, within GFF3831at 739.692 kb on + strand, within GFF3831at 739.692 kb on + strand, within GFF3831at 739.692 kb on + strand, within GFF3831at 739.770 kb on + strand, within GFF3831at 739.771 kb on - strand, within GFF3831at 739.836 kb on + strand, within GFF3831at 739.836 kb on + strand, within GFF3831at 739.836 kb on + strand, within GFF3831at 739.836 kb on + strand, within GFF3831at 739.837 kb on - strand, within GFF3831at 739.837 kb on - strand, within GFF3831at 740.084 kb on + strand, within GFF3832at 740.084 kb on + strand, within GFF3832at 740.084 kb on + strand, within GFF3832at 740.084 kb on + strand, within GFF3832at 740.084 kb on + strand, within GFF3832at 740.085 kb on - strand, within GFF3832at 740.085 kb on - strand, within GFF3832at 740.085 kb on - strand, within GFF3832at 740.085 kb on - strand, within GFF3832at 740.085 kb on - strand, within GFF3832at 740.177 kb on + strand, within GFF3832at 740.189 kb on + strand, within GFF3832at 740.190 kb on - strand, within GFF3832at 740.195 kb on + strand, within GFF3832at 740.195 kb on + strand, within GFF3832at 740.196 kb on - strand, within GFF3832at 740.196 kb on - strand, within GFF3832at 740.198 kb on + strand, within GFF3832at 740.198 kb on + strand, within GFF3832at 740.199 kb on - strand, within GFF3832at 740.222 kb on + strand, within GFF3832at 740.258 kb on + strand, within GFF3832at 740.397 kb on - strand, within GFF3832at 740.397 kb on - strand, within GFF3832at 740.397 kb on - strand, within GFF3832at 740.397 kb on - strand, within GFF3832

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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737,527 - -0.4
737,637 + -0.1
737,637 + +0.8
737,637 + -0.9
737,637 + +0.4
737,638 - -0.5
737,640 + +0.2
737,640 + +1.5
737,640 + -0.6
737,640 + -0.3
737,640 + +0.6
737,641 - -0.6
737,641 - +0.4
737,641 - -0.0
737,641 - +0.5
737,706 + +0.2
737,706 + +0.4
737,991 + GFF3829 0.53 +0.0
737,991 + GFF3829 0.53 +0.7
738,006 + GFF3829 0.56 +1.2
738,006 + GFF3829 0.56 +0.7
738,006 + GFF3829 0.56 +0.9
738,247 + +1.7
738,247 + +0.2
738,247 + +0.2
738,247 + +0.1
738,247 + +0.3
738,247 + -0.5
738,247 + -0.1
738,247 + +0.2
738,247 + +0.2
738,247 + -1.2
738,247 + +0.1
738,247 + -0.7
738,248 - -0.9
738,248 - -1.3
738,248 - -0.0
738,248 - -0.5
738,248 - -1.1
738,248 - -0.4
738,248 - +0.4
738,248 - +0.1
738,248 - -0.4
738,248 - +0.2
738,253 + -0.2
738,253 + +0.8
738,254 - +0.2
738,283 + -0.8
738,284 - -2.1
738,284 - +0.4
738,284 - +0.7
738,364 + +0.3
738,364 + -0.6
738,364 + -1.0
738,364 + -1.4
738,365 - +1.4
738,365 - +0.0
738,365 - +1.0
738,365 - +0.7
738,366 + +0.5
738,416 + +0.2
738,417 - -0.4
738,430 + +1.0
738,431 - +0.5
738,431 - +0.1
738,490 + +0.4
738,490 + -3.0
738,490 + -0.1
738,491 - +0.0
738,491 - -0.5
738,491 - +0.3
738,491 - -0.2
738,491 - -0.4
738,493 + +0.3
738,494 - +1.4
738,494 - +0.9
738,655 + GFF3830 0.21 +1.1
738,656 - GFF3830 0.21 -0.5
738,656 - GFF3830 0.21 -0.0
738,838 + GFF3830 0.39 +0.0
738,838 + GFF3830 0.39 -0.3
738,838 + GFF3830 0.39 -0.9
738,839 - GFF3830 0.39 -0.2
738,839 - GFF3830 0.39 +0.1
738,839 - GFF3830 0.39 -0.1
738,839 - GFF3830 0.39 -0.4
739,114 + GFF3830 0.66 -0.0
739,115 - GFF3830 0.66 +0.4
739,115 - GFF3830 0.66 -0.2
739,180 + GFF3830 0.72 -0.6
739,180 + GFF3830 0.72 -1.0
739,181 - GFF3830 0.73 +0.0
739,181 - GFF3830 0.73 +0.5
739,181 - GFF3830 0.73 -0.1
739,181 - GFF3830 0.73 -0.9
739,181 - GFF3830 0.73 -0.2
739,181 - GFF3830 0.73 +0.4
739,366 - -0.7
739,366 - -0.2
739,366 - -0.1
739,560 + GFF3831 0.23 -0.2
739,560 + GFF3831 0.23 -0.1
739,560 + GFF3831 0.23 -0.4
739,560 + GFF3831 0.23 +1.0
739,560 + GFF3831 0.23 -0.1
739,560 + GFF3831 0.23 +0.5
739,561 - GFF3831 0.23 +0.3
739,561 - GFF3831 0.23 +0.4
739,561 - GFF3831 0.23 -0.3
739,561 - GFF3831 0.23 -0.4
739,585 - GFF3831 0.28 -0.6
739,585 - GFF3831 0.28 -0.4
739,585 - GFF3831 0.28 +0.6
739,587 + GFF3831 0.28 +0.1
739,587 + GFF3831 0.28 +0.1
739,587 + GFF3831 0.28 +0.2
739,587 + GFF3831 0.28 +0.0
739,587 + GFF3831 0.28 +0.3
739,588 - GFF3831 0.29 -0.3
739,588 - GFF3831 0.29 +0.1
739,588 - GFF3831 0.29 +0.4
739,692 + GFF3831 0.52 +0.1
739,692 + GFF3831 0.52 -0.1
739,692 + GFF3831 0.52 -0.6
739,692 + GFF3831 0.52 +1.7
739,692 + GFF3831 0.52 +0.9
739,692 + GFF3831 0.52 -0.1
739,770 + GFF3831 0.69 -0.2
739,771 - GFF3831 0.69 +0.1
739,836 + GFF3831 0.83 +0.5
739,836 + GFF3831 0.83 -0.5
739,836 + GFF3831 0.83 -0.3
739,836 + GFF3831 0.83 -0.1
739,837 - GFF3831 0.84 -0.2
739,837 - GFF3831 0.84 +0.3
740,084 + GFF3832 0.24 +0.3
740,084 + GFF3832 0.24 +0.2
740,084 + GFF3832 0.24 -0.5
740,084 + GFF3832 0.24 +0.2
740,084 + GFF3832 0.24 -0.1
740,085 - GFF3832 0.25 +1.0
740,085 - GFF3832 0.25 +0.7
740,085 - GFF3832 0.25 +0.8
740,085 - GFF3832 0.25 +0.2
740,085 - GFF3832 0.25 -1.0
740,177 + GFF3832 0.37 -0.4
740,189 + GFF3832 0.39 +0.3
740,190 - GFF3832 0.39 -0.4
740,195 + GFF3832 0.40 +1.6
740,195 + GFF3832 0.40 +0.8
740,196 - GFF3832 0.40 +0.6
740,196 - GFF3832 0.40 +0.0
740,198 + GFF3832 0.40 +0.0
740,198 + GFF3832 0.40 -1.6
740,199 - GFF3832 0.40 +0.4
740,222 + GFF3832 0.44 +0.3
740,258 + GFF3832 0.49 -0.1
740,397 - GFF3832 0.68 -0.9
740,397 - GFF3832 0.68 +1.7
740,397 - GFF3832 0.68 -0.5
740,397 - GFF3832 0.68 +0.9

Or see this region's nucleotide sequence