Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3811

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3809 and GFF3810 are separated by 82 nucleotidesGFF3810 and GFF3811 are separated by 55 nucleotidesGFF3811 and GFF3812 are separated by 162 nucleotides GFF3809 - Glycosyltransferase (EC 2.4.1.-), at 711,416 to 713,254 GFF3809 GFF3810 - hypothetical protein, at 713,337 to 714,188 GFF3810 GFF3811 - COG0457: FOG: TPR repeat, at 714,244 to 715,563 GFF3811 GFF3812 - hypothetical protein, at 715,726 to 716,655 GFF3812 Position (kb) 714 715 716Strain fitness (log2 ratio) -2 -1 0 1 2at 713.367 kb on + strandat 713.368 kb on - strandat 713.531 kb on + strand, within GFF3810at 713.573 kb on + strand, within GFF3810at 713.573 kb on + strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.609 kb on + strand, within GFF3810at 714.269 kb on + strandat 714.270 kb on - strandat 714.270 kb on - strandat 714.443 kb on + strand, within GFF3811at 714.512 kb on + strand, within GFF3811at 714.512 kb on + strand, within GFF3811at 714.513 kb on - strand, within GFF3811at 714.513 kb on - strand, within GFF3811at 714.513 kb on - strand, within GFF3811at 714.513 kb on - strand, within GFF3811at 714.524 kb on + strand, within GFF3811at 714.524 kb on + strand, within GFF3811at 714.525 kb on - strand, within GFF3811at 714.525 kb on - strand, within GFF3811at 714.525 kb on - strand, within GFF3811at 714.525 kb on - strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.714 kb on - strand, within GFF3811at 714.714 kb on - strand, within GFF3811at 714.719 kb on + strand, within GFF3811at 714.719 kb on + strand, within GFF3811at 714.720 kb on - strand, within GFF3811at 714.725 kb on + strand, within GFF3811at 714.725 kb on + strand, within GFF3811at 714.725 kb on + strand, within GFF3811at 714.725 kb on + strand, within GFF3811at 714.726 kb on - strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.762 kb on - strand, within GFF3811at 714.797 kb on + strand, within GFF3811at 714.836 kb on + strand, within GFF3811at 714.836 kb on + strand, within GFF3811at 714.837 kb on - strand, within GFF3811at 714.920 kb on + strand, within GFF3811at 714.920 kb on + strand, within GFF3811at 714.921 kb on - strand, within GFF3811at 714.921 kb on - strand, within GFF3811at 715.031 kb on + strand, within GFF3811at 715.031 kb on + strand, within GFF3811at 715.032 kb on - strand, within GFF3811at 715.032 kb on - strand, within GFF3811at 715.032 kb on - strand, within GFF3811at 715.307 kb on + strand, within GFF3811at 715.307 kb on + strand, within GFF3811at 715.308 kb on - strand, within GFF3811at 715.308 kb on - strand, within GFF3811at 715.325 kb on + strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.326 kb on - strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.409 kb on + strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.410 kb on - strand, within GFF3811at 715.439 kb on + strandat 715.440 kb on - strandat 715.440 kb on - strandat 715.440 kb on - strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.587 kb on + strandat 715.588 kb on - strandat 715.588 kb on - strandat 715.588 kb on - strandat 715.637 kb on + strandat 715.638 kb on - strandat 715.658 kb on + strandat 715.658 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.661 kb on + strandat 715.662 kb on - strandat 715.662 kb on - strandat 715.662 kb on - strandat 715.662 kb on - strandat 715.662 kb on - strandat 715.693 kb on - strandat 715.715 kb on + strandat 715.715 kb on + strandat 715.716 kb on - strandat 715.718 kb on + strandat 715.718 kb on + strandat 715.719 kb on - strandat 715.768 kb on + strandat 715.769 kb on - strandat 715.769 kb on - strandat 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.819 kb on + strand, within GFF3812at 715.820 kb on - strand, within GFF3812at 715.820 kb on - strand, within GFF3812at 715.885 kb on + strand, within GFF3812at 715.886 kb on - strand, within GFF3812at 715.886 kb on - strand, within GFF3812at 715.886 kb on - strand, within GFF3812at 716.135 kb on - strand, within GFF3812at 716.158 kb on + strand, within GFF3812at 716.159 kb on - strand, within GFF3812at 716.159 kb on - strand, within GFF3812at 716.224 kb on + strand, within GFF3812at 716.224 kb on + strand, within GFF3812at 716.224 kb on + strand, within GFF3812at 716.224 kb on + strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.225 kb on - strand, within GFF3812at 716.239 kb on + strand, within GFF3812at 716.240 kb on - strand, within GFF3812at 716.299 kb on + strand, within GFF3812at 716.299 kb on + strand, within GFF3812at 716.299 kb on + strand, within GFF3812at 716.299 kb on + strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.300 kb on - strand, within GFF3812at 716.332 kb on + strand, within GFF3812at 716.332 kb on + strand, within GFF3812at 716.332 kb on + strand, within GFF3812at 716.332 kb on + strand, within GFF3812

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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713,367 + +1.8
713,368 - +0.0
713,531 + GFF3810 0.23 +0.7
713,573 + GFF3810 0.28 -0.7
713,573 + GFF3810 0.28 -0.4
713,574 - GFF3810 0.28 +0.7
713,574 - GFF3810 0.28 -1.8
713,574 - GFF3810 0.28 +0.7
713,574 - GFF3810 0.28 -1.2
713,574 - GFF3810 0.28 -0.8
713,574 - GFF3810 0.28 -0.3
713,609 + GFF3810 0.32 +0.2
714,269 + +0.5
714,270 - -2.0
714,270 - +0.1
714,443 + GFF3811 0.15 +0.0
714,512 + GFF3811 0.20 -0.5
714,512 + GFF3811 0.20 +0.4
714,513 - GFF3811 0.20 +1.4
714,513 - GFF3811 0.20 +0.6
714,513 - GFF3811 0.20 +1.0
714,513 - GFF3811 0.20 +0.7
714,524 + GFF3811 0.21 +0.2
714,524 + GFF3811 0.21 +0.4
714,525 - GFF3811 0.21 -1.2
714,525 - GFF3811 0.21 +1.0
714,525 - GFF3811 0.21 +0.1
714,525 - GFF3811 0.21 +0.2
714,557 + GFF3811 0.24 +0.4
714,557 + GFF3811 0.24 -1.2
714,557 + GFF3811 0.24 +0.6
714,557 + GFF3811 0.24 -0.5
714,557 + GFF3811 0.24 +0.6
714,558 - GFF3811 0.24 +0.6
714,558 - GFF3811 0.24 +1.0
714,558 - GFF3811 0.24 +0.4
714,558 - GFF3811 0.24 -0.2
714,558 - GFF3811 0.24 +0.3
714,714 - GFF3811 0.36 +0.5
714,714 - GFF3811 0.36 -0.1
714,719 + GFF3811 0.36 +1.5
714,719 + GFF3811 0.36 -0.0
714,720 - GFF3811 0.36 +0.2
714,725 + GFF3811 0.36 -1.0
714,725 + GFF3811 0.36 +1.1
714,725 + GFF3811 0.36 +0.0
714,725 + GFF3811 0.36 -0.8
714,726 - GFF3811 0.37 +0.3
714,761 + GFF3811 0.39 -1.4
714,761 + GFF3811 0.39 -0.2
714,761 + GFF3811 0.39 +0.5
714,761 + GFF3811 0.39 +0.5
714,761 + GFF3811 0.39 -0.2
714,762 - GFF3811 0.39 +0.0
714,797 + GFF3811 0.42 +0.1
714,836 + GFF3811 0.45 +0.7
714,836 + GFF3811 0.45 +0.2
714,837 - GFF3811 0.45 +0.6
714,920 + GFF3811 0.51 +0.7
714,920 + GFF3811 0.51 -0.4
714,921 - GFF3811 0.51 +0.5
714,921 - GFF3811 0.51 +0.4
715,031 + GFF3811 0.60 -0.3
715,031 + GFF3811 0.60 +0.6
715,032 - GFF3811 0.60 -0.0
715,032 - GFF3811 0.60 -0.5
715,032 - GFF3811 0.60 +0.1
715,307 + GFF3811 0.81 -1.1
715,307 + GFF3811 0.81 +0.0
715,308 - GFF3811 0.81 +0.1
715,308 - GFF3811 0.81 -0.2
715,325 + GFF3811 0.82 +0.3
715,326 - GFF3811 0.82 +0.5
715,326 - GFF3811 0.82 +0.9
715,326 - GFF3811 0.82 -1.3
715,326 - GFF3811 0.82 -0.0
715,326 - GFF3811 0.82 +0.0
715,409 + GFF3811 0.88 +0.4
715,409 + GFF3811 0.88 +0.0
715,409 + GFF3811 0.88 +0.0
715,409 + GFF3811 0.88 -0.2
715,409 + GFF3811 0.88 +0.5
715,409 + GFF3811 0.88 +0.3
715,410 - GFF3811 0.88 -1.0
715,410 - GFF3811 0.88 +1.4
715,410 - GFF3811 0.88 +0.3
715,410 - GFF3811 0.88 +0.5
715,410 - GFF3811 0.88 +0.8
715,439 + -0.8
715,440 - -0.8
715,440 - +0.2
715,440 - -0.0
715,587 + +0.9
715,587 + -0.4
715,587 + +0.2
715,587 + +0.4
715,587 + +0.8
715,587 + +0.4
715,587 + -0.8
715,587 + -0.2
715,588 - -0.0
715,588 - -0.8
715,588 - +0.8
715,637 + -0.1
715,638 - -0.6
715,658 + -0.0
715,658 + -0.2
715,661 + -1.4
715,661 + +0.5
715,661 + -1.3
715,661 + +0.4
715,661 + -0.2
715,661 + -0.2
715,662 - +0.9
715,662 - +0.0
715,662 - -0.2
715,662 - -0.9
715,662 - -0.3
715,693 - -0.3
715,715 + +0.0
715,715 + +1.7
715,716 - -0.6
715,718 + -0.4
715,718 + +0.5
715,719 - +0.2
715,768 + -0.1
715,769 - -0.0
715,769 - +0.5
715,819 + GFF3812 0.10 +0.0
715,819 + GFF3812 0.10 -0.9
715,819 + GFF3812 0.10 -0.3
715,819 + GFF3812 0.10 -0.1
715,819 + GFF3812 0.10 +0.2
715,819 + GFF3812 0.10 +0.0
715,819 + GFF3812 0.10 +0.1
715,820 - GFF3812 0.10 +0.2
715,820 - GFF3812 0.10 -0.2
715,885 + GFF3812 0.17 +0.2
715,886 - GFF3812 0.17 -0.3
715,886 - GFF3812 0.17 +0.8
715,886 - GFF3812 0.17 +0.0
716,135 - GFF3812 0.44 -0.8
716,158 + GFF3812 0.46 -1.2
716,159 - GFF3812 0.47 -2.5
716,159 - GFF3812 0.47 -1.3
716,224 + GFF3812 0.54 +0.5
716,224 + GFF3812 0.54 -0.2
716,224 + GFF3812 0.54 +0.5
716,224 + GFF3812 0.54 +0.4
716,225 - GFF3812 0.54 -0.6
716,225 - GFF3812 0.54 +0.2
716,225 - GFF3812 0.54 -1.1
716,225 - GFF3812 0.54 +0.6
716,225 - GFF3812 0.54 +0.3
716,225 - GFF3812 0.54 +0.8
716,239 + GFF3812 0.55 -0.5
716,240 - GFF3812 0.55 -0.1
716,299 + GFF3812 0.62 -0.8
716,299 + GFF3812 0.62 +0.2
716,299 + GFF3812 0.62 -0.2
716,299 + GFF3812 0.62 -0.0
716,300 - GFF3812 0.62 -0.1
716,300 - GFF3812 0.62 -0.1
716,300 - GFF3812 0.62 +1.6
716,300 - GFF3812 0.62 +0.3
716,300 - GFF3812 0.62 +0.2
716,332 + GFF3812 0.65 +0.3
716,332 + GFF3812 0.65 +0.8
716,332 + GFF3812 0.65 +0.6
716,332 + GFF3812 0.65 -0.5

Or see this region's nucleotide sequence