Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3810

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3809 and GFF3810 are separated by 82 nucleotidesGFF3810 and GFF3811 are separated by 55 nucleotides GFF3809 - Glycosyltransferase (EC 2.4.1.-), at 711,416 to 713,254 GFF3809 GFF3810 - hypothetical protein, at 713,337 to 714,188 GFF3810 GFF3811 - COG0457: FOG: TPR repeat, at 714,244 to 715,563 GFF3811 Position (kb) 713 714 715Strain fitness (log2 ratio) -2 -1 0 1 2at 712.344 kb on + strand, within GFF3809at 712.345 kb on - strand, within GFF3809at 712.542 kb on + strand, within GFF3809at 712.542 kb on + strand, within GFF3809at 712.542 kb on + strand, within GFF3809at 712.542 kb on + strand, within GFF3809at 712.543 kb on - strand, within GFF3809at 712.543 kb on - strand, within GFF3809at 712.543 kb on - strand, within GFF3809at 712.543 kb on - strand, within GFF3809at 712.764 kb on + strand, within GFF3809at 712.764 kb on + strand, within GFF3809at 712.764 kb on + strand, within GFF3809at 712.765 kb on - strand, within GFF3809at 712.765 kb on - strand, within GFF3809at 712.813 kb on - strand, within GFF3809at 712.813 kb on - strand, within GFF3809at 712.857 kb on + strand, within GFF3809at 712.857 kb on + strand, within GFF3809at 712.857 kb on + strand, within GFF3809at 712.858 kb on - strand, within GFF3809at 712.858 kb on - strand, within GFF3809at 712.858 kb on - strand, within GFF3809at 712.920 kb on + strand, within GFF3809at 712.921 kb on - strand, within GFF3809at 713.230 kb on - strandat 713.230 kb on - strandat 713.367 kb on + strandat 713.368 kb on - strandat 713.531 kb on + strand, within GFF3810at 713.573 kb on + strand, within GFF3810at 713.573 kb on + strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.574 kb on - strand, within GFF3810at 713.609 kb on + strand, within GFF3810at 714.269 kb on + strandat 714.270 kb on - strandat 714.270 kb on - strandat 714.443 kb on + strand, within GFF3811at 714.512 kb on + strand, within GFF3811at 714.512 kb on + strand, within GFF3811at 714.513 kb on - strand, within GFF3811at 714.513 kb on - strand, within GFF3811at 714.513 kb on - strand, within GFF3811at 714.513 kb on - strand, within GFF3811at 714.524 kb on + strand, within GFF3811at 714.524 kb on + strand, within GFF3811at 714.525 kb on - strand, within GFF3811at 714.525 kb on - strand, within GFF3811at 714.525 kb on - strand, within GFF3811at 714.525 kb on - strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.557 kb on + strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.558 kb on - strand, within GFF3811at 714.714 kb on - strand, within GFF3811at 714.714 kb on - strand, within GFF3811at 714.719 kb on + strand, within GFF3811at 714.719 kb on + strand, within GFF3811at 714.720 kb on - strand, within GFF3811at 714.725 kb on + strand, within GFF3811at 714.725 kb on + strand, within GFF3811at 714.725 kb on + strand, within GFF3811at 714.725 kb on + strand, within GFF3811at 714.726 kb on - strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.761 kb on + strand, within GFF3811at 714.762 kb on - strand, within GFF3811at 714.797 kb on + strand, within GFF3811at 714.836 kb on + strand, within GFF3811at 714.836 kb on + strand, within GFF3811at 714.837 kb on - strand, within GFF3811at 714.920 kb on + strand, within GFF3811at 714.920 kb on + strand, within GFF3811at 714.921 kb on - strand, within GFF3811at 714.921 kb on - strand, within GFF3811at 715.031 kb on + strand, within GFF3811at 715.031 kb on + strand, within GFF3811at 715.032 kb on - strand, within GFF3811at 715.032 kb on - strand, within GFF3811at 715.032 kb on - strand, within GFF3811

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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712,344 + GFF3809 0.50 +0.4
712,345 - GFF3809 0.51 +0.0
712,542 + GFF3809 0.61 -2.3
712,542 + GFF3809 0.61 +0.2
712,542 + GFF3809 0.61 +0.1
712,542 + GFF3809 0.61 +0.0
712,543 - GFF3809 0.61 +0.1
712,543 - GFF3809 0.61 -0.1
712,543 - GFF3809 0.61 -0.6
712,543 - GFF3809 0.61 +0.4
712,764 + GFF3809 0.73 +0.8
712,764 + GFF3809 0.73 +0.7
712,764 + GFF3809 0.73 +0.0
712,765 - GFF3809 0.73 +0.4
712,765 - GFF3809 0.73 +0.8
712,813 - GFF3809 0.76 +0.0
712,813 - GFF3809 0.76 +0.2
712,857 + GFF3809 0.78 -1.0
712,857 + GFF3809 0.78 +0.3
712,857 + GFF3809 0.78 +0.3
712,858 - GFF3809 0.78 +0.0
712,858 - GFF3809 0.78 +0.5
712,858 - GFF3809 0.78 +1.1
712,920 + GFF3809 0.82 +0.6
712,921 - GFF3809 0.82 +1.0
713,230 - +0.7
713,230 - +0.3
713,367 + +1.8
713,368 - +0.0
713,531 + GFF3810 0.23 +0.7
713,573 + GFF3810 0.28 -0.7
713,573 + GFF3810 0.28 -0.4
713,574 - GFF3810 0.28 +0.7
713,574 - GFF3810 0.28 -1.8
713,574 - GFF3810 0.28 +0.7
713,574 - GFF3810 0.28 -1.2
713,574 - GFF3810 0.28 -0.8
713,574 - GFF3810 0.28 -0.3
713,609 + GFF3810 0.32 +0.2
714,269 + +0.5
714,270 - -2.0
714,270 - +0.1
714,443 + GFF3811 0.15 +0.0
714,512 + GFF3811 0.20 -0.5
714,512 + GFF3811 0.20 +0.4
714,513 - GFF3811 0.20 +1.4
714,513 - GFF3811 0.20 +0.6
714,513 - GFF3811 0.20 +1.0
714,513 - GFF3811 0.20 +0.7
714,524 + GFF3811 0.21 +0.2
714,524 + GFF3811 0.21 +0.4
714,525 - GFF3811 0.21 -1.2
714,525 - GFF3811 0.21 +1.0
714,525 - GFF3811 0.21 +0.1
714,525 - GFF3811 0.21 +0.2
714,557 + GFF3811 0.24 +0.4
714,557 + GFF3811 0.24 -1.2
714,557 + GFF3811 0.24 +0.6
714,557 + GFF3811 0.24 -0.5
714,557 + GFF3811 0.24 +0.6
714,558 - GFF3811 0.24 +0.6
714,558 - GFF3811 0.24 +1.0
714,558 - GFF3811 0.24 +0.4
714,558 - GFF3811 0.24 -0.2
714,558 - GFF3811 0.24 +0.3
714,714 - GFF3811 0.36 +0.5
714,714 - GFF3811 0.36 -0.1
714,719 + GFF3811 0.36 +1.5
714,719 + GFF3811 0.36 -0.0
714,720 - GFF3811 0.36 +0.2
714,725 + GFF3811 0.36 -1.0
714,725 + GFF3811 0.36 +1.1
714,725 + GFF3811 0.36 +0.0
714,725 + GFF3811 0.36 -0.8
714,726 - GFF3811 0.37 +0.3
714,761 + GFF3811 0.39 -1.4
714,761 + GFF3811 0.39 -0.2
714,761 + GFF3811 0.39 +0.5
714,761 + GFF3811 0.39 +0.5
714,761 + GFF3811 0.39 -0.2
714,762 - GFF3811 0.39 +0.0
714,797 + GFF3811 0.42 +0.1
714,836 + GFF3811 0.45 +0.7
714,836 + GFF3811 0.45 +0.2
714,837 - GFF3811 0.45 +0.6
714,920 + GFF3811 0.51 +0.7
714,920 + GFF3811 0.51 -0.4
714,921 - GFF3811 0.51 +0.5
714,921 - GFF3811 0.51 +0.4
715,031 + GFF3811 0.60 -0.3
715,031 + GFF3811 0.60 +0.6
715,032 - GFF3811 0.60 -0.0
715,032 - GFF3811 0.60 -0.5
715,032 - GFF3811 0.60 +0.1

Or see this region's nucleotide sequence