Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF369 and GFF370 are separated by 18 nucleotides GFF370 and GFF371 are separated by 61 nucleotides
GFF369 - Trypsin domain protein, at 31,359 to 32,627
GFF369
GFF370 - AMP nucleosidase (EC 3.2.2.4), at 32,646 to 34,148
GFF370
GFF371 - MgtC family, at 34,210 to 35,493
GFF371
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -2
-1
0
1 at 32.103 kb on + strand, within GFF369 at 32.103 kb on + strand, within GFF369 at 32.103 kb on + strand, within GFF369 at 32.104 kb on - strand, within GFF369 at 32.104 kb on - strand, within GFF369 at 32.121 kb on + strand, within GFF369 at 32.122 kb on - strand, within GFF369 at 32.419 kb on - strand, within GFF369 at 32.508 kb on + strand at 33.136 kb on + strand, within GFF370 at 33.136 kb on + strand, within GFF370 at 33.137 kb on - strand, within GFF370 at 33.137 kb on - strand, within GFF370 at 33.319 kb on + strand, within GFF370 at 33.430 kb on + strand, within GFF370 at 33.430 kb on + strand, within GFF370 at 33.430 kb on + strand, within GFF370 at 33.431 kb on - strand, within GFF370 at 33.431 kb on - strand, within GFF370 at 33.431 kb on - strand, within GFF370 at 33.431 kb on - strand, within GFF370 at 33.487 kb on + strand, within GFF370 at 33.496 kb on + strand, within GFF370 at 33.496 kb on + strand, within GFF370 at 33.497 kb on - strand, within GFF370 at 33.497 kb on - strand, within GFF370 at 33.547 kb on + strand, within GFF370 at 33.548 kb on - strand, within GFF370 at 33.572 kb on - strand, within GFF370 at 33.838 kb on + strand, within GFF370 at 33.838 kb on + strand, within GFF370 at 33.839 kb on - strand, within GFF370 at 33.841 kb on + strand, within GFF370 at 33.841 kb on + strand, within GFF370 at 33.841 kb on + strand, within GFF370 at 33.842 kb on - strand, within GFF370 at 33.842 kb on - strand, within GFF370 at 33.842 kb on - strand, within GFF370 at 33.851 kb on - strand, within GFF370 at 33.907 kb on + strand, within GFF370 at 33.908 kb on - strand, within GFF370 at 33.976 kb on + strand, within GFF370 at 33.976 kb on + strand, within GFF370 at 33.976 kb on + strand, within GFF370 at 33.977 kb on - strand, within GFF370 at 33.983 kb on - strand, within GFF370 at 34.069 kb on + strand at 34.069 kb on + strand at 34.070 kb on - strand at 34.070 kb on - strand at 34.070 kb on - strand at 34.129 kb on + strand at 34.130 kb on - strand at 34.153 kb on + strand at 34.153 kb on + strand at 34.154 kb on - strand at 34.456 kb on + strand, within GFF371 at 34.457 kb on - strand, within GFF371 at 34.516 kb on + strand, within GFF371 at 34.516 kb on + strand, within GFF371 at 34.516 kb on + strand, within GFF371
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 32,103 + GFF369 0.59 -0.1 32,103 + GFF369 0.59 +1.0 32,103 + GFF369 0.59 +0.7 32,104 - GFF369 0.59 -0.2 32,104 - GFF369 0.59 +0.1 32,121 + GFF369 0.60 +0.6 32,122 - GFF369 0.60 -1.6 32,419 - GFF369 0.84 -2.3 32,508 + -0.4 33,136 + GFF370 0.33 +0.1 33,136 + GFF370 0.33 -0.0 33,137 - GFF370 0.33 +0.9 33,137 - GFF370 0.33 -0.5 33,319 + GFF370 0.45 -0.4 33,430 + GFF370 0.52 -1.1 33,430 + GFF370 0.52 -0.4 33,430 + GFF370 0.52 +0.2 33,431 - GFF370 0.52 -0.9 33,431 - GFF370 0.52 -0.1 33,431 - GFF370 0.52 -1.9 33,431 - GFF370 0.52 -0.7 33,487 + GFF370 0.56 +0.3 33,496 + GFF370 0.57 -0.9 33,496 + GFF370 0.57 +0.3 33,497 - GFF370 0.57 -0.1 33,497 - GFF370 0.57 -1.0 33,547 + GFF370 0.60 -0.4 33,548 - GFF370 0.60 -2.5 33,572 - GFF370 0.62 -0.1 33,838 + GFF370 0.79 -0.5 33,838 + GFF370 0.79 -2.1 33,839 - GFF370 0.79 -0.8 33,841 + GFF370 0.80 -0.4 33,841 + GFF370 0.80 +0.2 33,841 + GFF370 0.80 -1.3 33,842 - GFF370 0.80 +0.2 33,842 - GFF370 0.80 +0.7 33,842 - GFF370 0.80 -0.6 33,851 - GFF370 0.80 -0.4 33,907 + GFF370 0.84 +0.4 33,908 - GFF370 0.84 -0.4 33,976 + GFF370 0.88 -0.3 33,976 + GFF370 0.88 +1.1 33,976 + GFF370 0.88 -0.9 33,977 - GFF370 0.89 -0.3 33,983 - GFF370 0.89 +0.4 34,069 + +0.7 34,069 + -0.5 34,070 - +0.4 34,070 - +0.4 34,070 - +0.6 34,129 + +0.4 34,130 - +0.1 34,153 + -0.1 34,153 + +0.7 34,154 - +0.0 34,456 + GFF371 0.19 -0.2 34,457 - GFF371 0.19 +0.6 34,516 + GFF371 0.24 -0.0 34,516 + GFF371 0.24 -0.8 34,516 + GFF371 0.24 +0.0
Or see this region's nucleotide sequence