Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3638 and GFF3639 are separated by 136 nucleotides GFF3639 and GFF3640 are separated by 67 nucleotides GFF3640 and GFF3641 are separated by 5 nucleotides
GFF3638 - sensory box histidine kinase/response regulator, at 521,943 to 523,790
GFF3638
GFF3639 - Outer membrane protein A precursor, at 523,927 to 524,598
GFF3639
GFF3640 - Two-component hybrid sensor and regulator, at 524,666 to 525,127
GFF3640
GFF3641 - Mg(2+) transport ATPase protein C, at 525,133 to 525,657
GFF3641
Position (kb) 523
524
525 Strain fitness (log2 ratio) -1
0
1 at 522.982 kb on + strand, within GFF3638 at 522.983 kb on - strand, within GFF3638 at 522.983 kb on - strand, within GFF3638 at 523.013 kb on - strand, within GFF3638 at 523.013 kb on - strand, within GFF3638 at 523.294 kb on + strand, within GFF3638 at 523.295 kb on - strand, within GFF3638 at 523.649 kb on - strand at 524.128 kb on + strand, within GFF3639 at 524.209 kb on + strand, within GFF3639 at 524.209 kb on + strand, within GFF3639 at 524.210 kb on - strand, within GFF3639 at 524.210 kb on - strand, within GFF3639 at 524.210 kb on - strand, within GFF3639 at 524.219 kb on - strand, within GFF3639 at 524.219 kb on - strand, within GFF3639 at 524.219 kb on - strand, within GFF3639 at 524.264 kb on - strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.386 kb on + strand, within GFF3639 at 524.387 kb on - strand, within GFF3639 at 524.387 kb on - strand, within GFF3639 at 524.387 kb on - strand, within GFF3639 at 524.387 kb on - strand, within GFF3639 at 524.462 kb on - strand, within GFF3639 at 524.462 kb on - strand, within GFF3639 at 524.581 kb on + strand at 524.649 kb on + strand at 524.649 kb on + strand at 524.649 kb on + strand at 524.649 kb on + strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.650 kb on - strand at 524.653 kb on + strand at 524.653 kb on + strand at 524.653 kb on + strand at 524.654 kb on - strand at 524.654 kb on - strand at 524.654 kb on - strand at 524.705 kb on + strand at 525.036 kb on - strand, within GFF3640
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 522,982 + GFF3638 0.56 -0.6 522,983 - GFF3638 0.56 +0.2 522,983 - GFF3638 0.56 -0.3 523,013 - GFF3638 0.58 -0.4 523,013 - GFF3638 0.58 -0.1 523,294 + GFF3638 0.73 +0.1 523,295 - GFF3638 0.73 +0.4 523,649 - +1.6 524,128 + GFF3639 0.30 -0.2 524,209 + GFF3639 0.42 +0.4 524,209 + GFF3639 0.42 -1.4 524,210 - GFF3639 0.42 -0.9 524,210 - GFF3639 0.42 -0.3 524,210 - GFF3639 0.42 -1.2 524,219 - GFF3639 0.43 -0.0 524,219 - GFF3639 0.43 -0.6 524,219 - GFF3639 0.43 +0.2 524,264 - GFF3639 0.50 +1.4 524,386 + GFF3639 0.68 -0.2 524,386 + GFF3639 0.68 -1.4 524,386 + GFF3639 0.68 +0.8 524,386 + GFF3639 0.68 -0.6 524,386 + GFF3639 0.68 +0.3 524,387 - GFF3639 0.68 -0.9 524,387 - GFF3639 0.68 -0.7 524,387 - GFF3639 0.68 -0.3 524,387 - GFF3639 0.68 +0.1 524,462 - GFF3639 0.80 -1.6 524,462 - GFF3639 0.80 -0.1 524,581 + +0.2 524,649 + +0.1 524,649 + +1.0 524,649 + -1.0 524,649 + +0.1 524,650 - -0.9 524,650 - +0.5 524,650 - -0.2 524,650 - +0.3 524,650 - +0.2 524,650 - +1.6 524,650 - +0.8 524,653 + +0.6 524,653 + -0.1 524,653 + +0.8 524,654 - +0.2 524,654 - -0.5 524,654 - -0.5 524,705 + -0.1 525,036 - GFF3640 0.80 +0.2
Or see this region's nucleotide sequence