Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3225

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
106,800	-		GFF3224	0.54	-0.1
107,300	+		GFF3224	0.79	+0.2
107,467	+		GFF3224	0.88	+0.0
107,468	-		GFF3224	0.88	-0.6
107,468	-		GFF3224	0.88	-0.6
107,468	-		GFF3224	0.88	+0.3
107,606	+				-0.4
107,606	+				+0.2
107,611	+				-0.2
107,611	+				+0.1
107,611	+				+0.6
107,611	+				+0.0
107,611	+				+0.5
107,708	-				+0.4
107,727	-				-0.0
107,727	-				-0.4
107,895	+		GFF3225	0.12	-0.9
107,908	-		GFF3225	0.13	+0.7
107,970	+		GFF3225	0.19	+0.2
107,970	+		GFF3225	0.19	-0.5
107,971	-		GFF3225	0.19	+0.2
107,971	-		GFF3225	0.19	-1.0
107,971	-		GFF3225	0.19	-0.3
108,012	+		GFF3225	0.23	-0.1
108,012	+		GFF3225	0.23	-0.2
108,012	+		GFF3225	0.23	-0.0
108,036	+		GFF3225	0.25	-0.4
108,036	+		GFF3225	0.25	-0.2
108,036	+		GFF3225	0.25	+0.3
108,037	-		GFF3225	0.25	-1.0
108,045	+		GFF3225	0.26	+0.1
108,045	+		GFF3225	0.26	-0.1
108,045	+		GFF3225	0.26	+0.1
108,046	-		GFF3225	0.26	+0.2
108,046	-		GFF3225	0.26	-0.3
108,046	-		GFF3225	0.26	+1.0
108,273	+		GFF3225	0.46	+0.6
108,274	-		GFF3225	0.47	+0.4
108,274	-		GFF3225	0.47	+0.9
108,274	-		GFF3225	0.47	-0.7
108,290	+		GFF3225	0.48	-0.0
108,291	-		GFF3225	0.48	-1.3
108,291	-		GFF3225	0.48	+0.1
108,429	+		GFF3225	0.61	-1.1
108,430	-		GFF3225	0.61	+0.9
108,553	-		GFF3225	0.72	-0.0
108,726	+		GFF3225	0.88	+0.4
108,781	-				-1.0
108,799	+				+0.4
108,826	+				+0.1
108,941	+				-1.6
108,941	+				-1.7
108,942	-				+0.4
109,371	+		GFF3226	0.33	+0.6
109,371	+		GFF3226	0.33	+2.0
109,371	+		GFF3226	0.33	+0.2
109,371	+		GFF3226	0.33	+0.3
109,372	-		GFF3226	0.33	-1.0
109,372	-		GFF3226	0.33	+0.3
109,372	-		GFF3226	0.33	+0.4
109,399	-		GFF3226	0.35	+0.1
109,479	+		GFF3226	0.40	-0.4
109,530	+		GFF3226	0.44	+0.6
109,680	+		GFF3226	0.55	+0.3
109,681	-		GFF3226	0.55	+0.4
109,728	+		GFF3226	0.59	+0.6